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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9426 and 9427 are separated by 780 nucleotides
9427 and 9428 are separated by 243 nucleotides
9428 and 9429 are separated by 734 nucleotides
9429 and 9430 are separated by 94 nucleotides
mRNA_1058: 9426 - HMMPfam-Protein of unknown function (DUF1115)-PF06544,PIRSF--PIRSF038021,SUPERFAMILY--SSF54495, at 298,923 to 300,090
9426
mRNA_1059: 9427 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 300,871 to 301,562
9427
mRNA_1060: 9428 - K01530 E3.6.3.1 phospholipid-translocating ATPase, at 301,806 to 307,768
9428
mRNA_1061: 9429 - BLAST heat shock 70 kDa protein 12A [Rhizoctonia solani AG-..., at 308,503 to 311,284
9429
mRNA_1062: 9430 - K10742 DNA2 DNA replication ATP-dependent helicase Dna2, at 311,379 to 314,968
9430
Group
Condition
mRNA
_1058
mRNA
_1059
mRNA
_1060
mRNA
_1061
mRNA
_1062
9426
9427
9428
9429
9430
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.8
+0.4
-0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.1
-0.2
-0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.8
+0.0
-0.4
-1.0
-0.5
growth on oleic acid
YNB Glucose
+0.1
-0.5
-0.0
-0.5
+0.1
growth on oleic acid
YNB Oleic Acid
-0.3
-0.5
+0.1
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.1
-0.1
-0.8
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.6
+0.3
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.3
-0.0
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.0
-0.2
-0.3
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.1
+0.0
-0.3
-0.2
growth on ypd
YPD
-0.4
+0.1
+0.1
-0.0
-0.3
auxotrophy
Dropout Complete
+0.1
-0.7
+0.3
+0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.3
-0.0
-0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.1
+0.0
-0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.3
+0.1
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.5
+0.3
+0.2
-0.0
growth on ricinoleic acid
YNB Glucose
+0.2
-0.4
+0.2
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.0
+0.0
-0.3
-0.2
auxotrophy
YNB Glucose
+0.1
-0.4
+0.4
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
+0.3
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.3
+0.0
-0.4
-0.2
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