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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9434 and 9435 are separated by 845 nucleotides
9435 and 9436 are separated by 163 nucleotides
9436 and 9437 are separated by 96 nucleotides
9437 and 9438 are separated by 420 nucleotides
mRNA_1066: 9434 - KOG1383 Glutamate decarboxylase/sphingosine phosphate lyase, at 320,131 to 322,252
9434
mRNA_1067: 9435 - K01580 E4.1.1.15, gadB, gadA, GAD glutamate decarboxylase, at 323,098 to 325,825
9435
mRNA_1068: 9436 - Hypothetical Protein, at 325,989 to 327,863
9436
mRNA_1069: 9437 - K11267 PDS5 sister chromatid cohesion protein PDS5, at 327,960 to 333,301
9437
mRNA_1070: 9438 - K20792 NAA15_16 N-alpha-acetyltransferase 15/16, NatA auxiliary subunit, at 333,722 to 337,577
9438
Group
Condition
mRNA
_1066
mRNA
_1067
mRNA
_1068
mRNA
_1069
mRNA
_1070
9434
9435
9436
9437
9438
growth on oleic acid
YNB Oleic Acid
-0.1
-0.4
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.8
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.7
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.4
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-1.4
+0.4
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.5
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.6
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.3
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.3
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.4
-0.2
N.D.
N.D.
growth on ypd
YPD
-0.1
+0.1
-0.3
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.6
+0.2
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.1
-0.4
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.0
-0.1
N.D.
N.D.
auxotrophy
Dropout Complete
+0.4
-0.5
+0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.2
-0.0
N.D.
N.D.
auxotrophy
YNB Glucose
+0.4
-0.3
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
+0.3
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.7
+0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.4
+0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.0
+0.2
N.D.
N.D.
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