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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9438 and 9439 are separated by 288 nucleotides
9439 and 9440 are separated by 815 nucleotides
9440 and 9441 are separated by 784 nucleotides
9441 and 9442 are separated by 765 nucleotides
mRNA_1070: 9438 - K20792 NAA15_16 N-alpha-acetyltransferase 15/16, NatA auxiliary subunit, at 333,722 to 337,577
9438
mRNA_1071: 9439 - K18757 LARP1 la-related protein 1, at 337,866 to 340,861
9439
mRNA_1072: 9440 - Hypothetical Protein, at 341,677 to 343,060
9440
mRNA_1073: 9441 - Hypothetical Protein, at 343,845 to 345,302
9441
mRNA_1074: 9442 - HMMPfam-Ankyrin repeats (3 copies)-PF12796,ProSiteProfiles-Ankyrin repeat profile.-PS50088,ProSiteProfiles-Ankyrin repeat region circular profile.-PS50297,SUPERFAMILY--SSF48403, at 346,068 to 346,985
9442
Group
Condition
mRNA
_1070
mRNA
_1071
mRNA
_1072
mRNA
_1073
mRNA
_1074
9438
9439
9440
9441
9442
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-2.1
-0.0
-0.5
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.7
-0.2
-0.6
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.3
-0.4
-0.4
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.8
-0.1
-0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-1.0
-0.2
+0.2
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.3
-0.0
-0.5
+0.0
auxotrophy
Dropout Complete
N.D.
-0.2
+0.6
-1.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
+0.2
-0.6
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
-0.3
-0.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.2
+0.2
+0.4
-1.1
auxotrophy
YNB Glucose
N.D.
-0.3
+0.4
-0.6
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
-0.3
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
+0.1
+0.1
-0.4
growth on ypd
YPD
N.D.
+0.4
-0.4
+0.4
-0.5
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
+0.1
+0.1
-0.3
growth on oleic acid
YNB Glucose
N.D.
+0.4
+0.2
-0.1
-0.4
growth on ricinoleic acid
YNB Glucose
N.D.
+0.4
+0.3
+0.2
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
-0.5
+0.5
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
+0.5
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.0
+0.2
-0.3
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.6
+0.0
-0.7
+0.6
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