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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9440 and 9441 are separated by 784 nucleotides
9441 and 9442 are separated by 765 nucleotides
9442 and 9443 are separated by 184 nucleotides
9443 and 9444 are separated by 248 nucleotides
mRNA_1072: 9440 - Hypothetical Protein, at 341,677 to 343,060
9440
mRNA_1073: 9441 - Hypothetical Protein, at 343,845 to 345,302
9441
mRNA_1074: 9442 - HMMPfam-Ankyrin repeats (3 copies)-PF12796,ProSiteProfiles-Ankyrin repeat profile.-PS50088,ProSiteProfiles-Ankyrin repeat region circular profile.-PS50297,SUPERFAMILY--SSF48403, at 346,068 to 346,985
9442
mRNA_1075: 9443 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 347,170 to 348,411
9443
mRNA_1076: 9444 - K02324 POLE1 DNA polymerase epsilon subunit 1, at 348,660 to 356,355
9444
Group
Condition
mRNA
_1072
mRNA
_1073
mRNA
_1074
mRNA
_1075
mRNA
_1076
9440
9441
9442
9443
9444
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.6
-0.0
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.4
-0.2
+0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.5
-0.3
+0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.3
-0.1
-0.3
N.D.
growth on ypd
YPD
-0.4
+0.4
-0.5
-0.1
N.D.
growth on oleic acid
YNB Glucose
+0.2
-0.1
-0.4
-0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.5
+0.0
+0.0
N.D.
auxotrophy
Dropout Complete
+0.6
-1.0
-0.1
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.6
+0.0
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.1
+0.1
-0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.1
+0.0
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.1
-0.4
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.4
-1.1
+0.3
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
-0.3
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.5
+0.2
-0.2
N.D.
auxotrophy
YNB Glucose
+0.4
-0.6
+0.2
+0.0
N.D.
growth on ricinoleic acid
YNB Glucose
+0.3
+0.2
-0.7
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.7
+0.6
+0.3
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.2
+0.0
+0.4
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.5
+0.3
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.3
+0.5
+0.1
N.D.
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