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Cofit
Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9445 and 9446 are separated by 798 nucleotides
9446 and 9447 are separated by 309 nucleotides
9447 and 9448 are separated by 269 nucleotides
9448 and 9449 are separated by 560 nucleotides
mRNA_1077: 9445 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 356,751 to 359,055
9445
mRNA_1078: 9446 - K00784 rnz ribonuclease Z, at 359,854 to 363,039
9446
mRNA_1079: 9447 - HMMPfam-Frag1/DRAM/Sfk1 family-PF10277, at 363,349 to 364,713
9447
mRNA_1080: 9448 - Hypothetical Protein, at 364,983 to 366,147
9448
mRNA_1081: 9449 - Hypothetical Protein, at 366,708 to 367,893
9449
Group
Condition
mRNA
_1077
mRNA
_1078
mRNA
_1079
mRNA
_1080
mRNA
_1081
9445
9446
9447
9448
9449
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
-0.5
-1.9
+0.0
growth on oleic acid
YNB Glucose
-0.3
N.D.
+0.1
-0.0
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
-0.2
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
N.D.
-0.0
-0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
N.D.
-0.1
+0.4
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
N.D.
+0.1
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
+0.4
-0.3
-0.1
growth on oleic acid
YNB Oleic Acid
-0.4
N.D.
+0.1
+0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
-0.1
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
N.D.
+0.5
-0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
+0.5
+0.4
-0.6
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
-0.2
-0.0
+0.3
growth on ypd
YPD
-0.1
N.D.
+0.1
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.4
+0.0
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
N.D.
+0.2
+0.6
+0.4
auxotrophy
Dropout Complete
-0.2
N.D.
+0.2
+0.4
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
-0.1
+0.6
+0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.3
N.D.
+0.2
+0.6
+0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
+0.3
+0.3
+0.4
auxotrophy
YNB Glucose
-0.2
N.D.
+0.2
+0.4
+0.7
growth on ricinoleic acid
YNB Glucose
-0.3
N.D.
+0.2
+0.7
+0.6
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