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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9454 and 9455 are separated by 402 nucleotides
9455 and 9456 are separated by 482 nucleotides
9456 and 9457 are separated by 159 nucleotides
9457 and 9458 are separated by 288 nucleotides
mRNA_1086: 9454 - Hypothetical Protein, at 374,386 to 377,567
9454
mRNA_1087: 9455 - KOG2793 Putative N2,N2-dimethylguanosine tRNA methyltransferase, at 377,970 to 379,646
9455
mRNA_1088: 9456 - KOG3179 Predicted glutamine synthetase, at 380,129 to 381,362
9456
mRNA_1089: 9457 - K01638 aceB, glcB malate synthase, at 381,522 to 383,960
9457
mRNA_1090: 9458 - K12393 AP1M AP-1 complex subunit mu, at 384,249 to 386,320
9458
Group
Condition
mRNA
_1086
mRNA
_1087
mRNA
_1088
mRNA
_1089
mRNA
_1090
9454
9455
9456
9457
9458
growth on oleic acid
YNB Oleic Acid
-0.1
-0.2
-0.5
-2.9
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.1
-0.4
-3.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.3
+0.3
-2.6
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.5
-0.0
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.3
+0.2
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.3
+0.4
-0.2
N.D.
growth on oleic acid
YNB Glucose
-0.1
-0.1
+0.1
-0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.3
+0.0
+0.1
N.D.
auxotrophy
YNB Glucose
-0.3
-0.2
+0.3
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
-0.0
-0.1
+0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
-0.4
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.3
-0.0
-0.1
N.D.
auxotrophy
Dropout Complete
-0.4
-0.0
+0.5
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
-0.4
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
-0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.1
+0.1
+0.3
N.D.
growth on ypd
YPD
-0.0
+0.3
+0.2
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.4
-0.1
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.3
+0.4
+0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.3
+0.7
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.3
+0.7
+0.2
N.D.
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