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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9456 and 9457 are separated by 159 nucleotides
9457 and 9458 are separated by 288 nucleotides
9458 and 9459 are separated by 370 nucleotides
9459 and 9460 are separated by 119 nucleotides
mRNA_1088: 9456 - KOG3179 Predicted glutamine synthetase, at 380,129 to 381,362
9456
mRNA_1089: 9457 - K01638 aceB, glcB malate synthase, at 381,522 to 383,960
9457
mRNA_1090: 9458 - K12393 AP1M AP-1 complex subunit mu, at 384,249 to 386,320
9458
mRNA_1091: 9459 - Hypothetical Protein, at 386,691 to 388,371
9459
mRNA_1092: 9460 - SUPERFAMILY--SSF52833, at 388,491 to 389,761
9460
Group
Condition
mRNA
_1088
mRNA
_1089
mRNA
_1090
mRNA
_1091
mRNA
_1092
9456
9457
9458
9459
9460
growth on oleic acid
YNB Oleic Acid
-0.5
-2.9
N.D.
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-3.0
N.D.
+0.4
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-2.6
N.D.
+0.3
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.1
N.D.
-0.3
-0.1
growth on oleic acid
YNB Glucose
+0.1
-0.4
N.D.
+0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.2
N.D.
+0.4
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.1
N.D.
+0.0
-0.1
growth on ypd
YPD
+0.2
-0.2
N.D.
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.4
N.D.
-0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.2
N.D.
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
N.D.
+0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.1
N.D.
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.0
N.D.
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.2
N.D.
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.3
N.D.
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.2
N.D.
+0.4
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
-0.0
N.D.
-0.4
+0.1
auxotrophy
YNB Glucose
+0.3
-0.1
N.D.
+0.4
+0.0
auxotrophy
Dropout Complete
+0.5
-0.1
N.D.
+0.2
-0.0
growth on ricinoleic acid
YNB Glucose
-0.1
+0.0
N.D.
+0.5
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
+0.2
N.D.
+0.4
-0.1
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