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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9460 and 9461 are separated by 70 nucleotides
9461 and 9462 are separated by 1037 nucleotides
9462 and 9463 are separated by 489 nucleotides
9463 and 9464 are separated by 80 nucleotides
mRNA_1092: 9460 - SUPERFAMILY--SSF52833, at 388,491 to 389,761
9460
mRNA_1093: 9461 - K08734 MLH1 DNA mismatch repair protein MLH1, at 389,832 to 392,680
9461
mRNA_1094: 9462 - HMMPfam-Frag1/DRAM/Sfk1 family-PF10277, at 393,718 to 395,326
9462
mRNA_1095: 9463 - KOG2741 Dimeric dihydrodiol dehydrogenase, at 395,816 to 397,150
9463
mRNA_1096: 9464 - KOG1611 Predicted short chain-type dehydrogenase, at 397,231 to 398,090
9464
Group
Condition
mRNA
_1092
mRNA
_1093
mRNA
_1094
mRNA
_1095
mRNA
_1096
9460
9461
9462
9463
9464
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.2
-0.1
-0.7
-1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.2
-0.4
+0.0
-0.9
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.2
-0.3
-0.5
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.0
-0.3
-0.3
-0.3
growth on oleic acid
YNB Glucose
-0.3
-0.2
-0.2
+0.7
-1.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.2
-0.2
-0.6
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
-0.0
-0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
-0.2
+0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.1
-0.5
+0.6
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.0
-0.5
-0.0
+0.8
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
+0.2
-0.7
+0.7
auxotrophy
Dropout Complete
-0.0
+0.1
-0.1
+0.5
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.1
+0.2
-0.2
-0.2
growth on ypd
YPD
-0.1
+0.0
-0.2
+0.5
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.0
-0.6
+0.2
+0.5
growth on ricinoleic acid
YNB Glucose
+0.3
+0.0
-0.3
+0.1
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
-0.1
+0.6
+0.4
auxotrophy
YNB Glucose
+0.0
-0.0
-0.0
+0.6
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.0
-0.1
+0.5
+0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.0
+0.2
+0.3
+0.9
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
+0.2
+0.8
+1.0
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