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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9464 and 9465 are separated by 1053 nucleotides
9465 and 9466 are separated by 447 nucleotides
9466 and 9467 are separated by 361 nucleotides
9467 and 9468 are separated by 286 nucleotides
mRNA_1096: 9464 - KOG1611 Predicted short chain-type dehydrogenase, at 397,231 to 398,090
9464
mRNA_1097: 9465 - Hypothetical Protein, at 399,144 to 399,987
9465
mRNA_1098: 9466 - Hypothetical Protein, at 400,435 to 400,998
9466
mRNA_1099: 9467 - K08515 VAMP7 vesicle-associated membrane protein 7, at 401,360 to 402,298
9467
mRNA_1100: 9468 - K14679 TRL1 tRNA ligase, at 402,585 to 405,523
9468
Group
Condition
mRNA
_1096
mRNA
_1097
mRNA
_1098
mRNA
_1099
mRNA
_1100
9464
9465
9466
9467
9468
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.0
-0.3
-0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.9
+0.1
-0.2
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.7
-0.3
+0.2
N.D.
growth on oleic acid
YNB Glucose
-1.1
-0.1
+0.6
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.2
+0.2
-0.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.8
-0.4
-0.5
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.0
+0.4
-0.0
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
+0.2
+0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
-0.5
+0.1
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.2
-0.1
+0.1
N.D.
growth on ypd
YPD
+0.3
-0.4
-0.1
+0.5
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.9
-0.2
-0.5
+0.2
N.D.
auxotrophy
Dropout Complete
-0.3
+0.3
+0.1
+0.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.1
+0.5
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
+0.4
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
+0.2
+0.5
N.D.
auxotrophy
YNB Glucose
+0.3
+0.1
+0.4
+0.3
N.D.
growth on ricinoleic acid
YNB Glucose
+0.4
-0.5
+0.7
+0.6
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+1.0
-0.2
-0.4
+0.9
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
-0.3
+0.5
+0.5
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
+0.0
+0.4
+0.8
N.D.
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