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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9467 and 9468 are separated by 286 nucleotides
9468 and 9469 are separated by 269 nucleotides
9469 and 9470 are separated by 168 nucleotides
9470 and 9471 are separated by 581 nucleotides
mRNA_1099: 9467 - K08515 VAMP7 vesicle-associated membrane protein 7, at 401,360 to 402,298
9467
mRNA_1100: 9468 - K14679 TRL1 tRNA ligase, at 402,585 to 405,523
9468
mRNA_1101: 9469 - KOG1206 Peroxisomal multifunctional beta-oxidation protein and related enzymes, at 405,793 to 407,272
9469
mRNA_1102: 9470 - K03327 TC.MATE, SLC47A, norM, mdtK, dinF multidrug resistance protein, MATE family, at 407,441 to 409,508
9470
mRNA_1103: 9471 - KOG0252 Inorganic phosphate transporter, at 410,090 to 412,457
9471
Group
Condition
mRNA
_1099
mRNA
_1100
mRNA
_1101
mRNA
_1102
mRNA
_1103
9467
9468
9469
9470
9471
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.3
-1.0
-1.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
N.D.
-0.8
-0.2
-0.2
growth on oleic acid
YNB Glucose
-0.1
N.D.
-0.3
+0.3
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
N.D.
-0.2
-0.3
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
N.D.
-0.6
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
-0.0
-0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
+0.1
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
N.D.
-0.4
+0.5
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.4
N.D.
-0.3
+0.4
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
-0.4
+0.8
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
-0.2
+0.4
-0.1
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
+0.0
+0.4
+0.1
auxotrophy
YNB Glucose
+0.3
N.D.
+0.0
+0.4
-0.1
growth on ricinoleic acid
YNB Glucose
+0.6
N.D.
-0.2
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
+0.1
-0.1
+0.5
auxotrophy
Dropout Complete
+0.5
N.D.
-0.1
+0.7
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.9
N.D.
+0.2
+0.3
-0.4
growth on ypd
YPD
+0.5
N.D.
+0.1
+0.6
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.8
N.D.
-0.1
+0.5
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
N.D.
+0.1
+0.4
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
N.D.
-0.2
+0.6
+0.8
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