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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9468 and 9469 are separated by 269 nucleotides
9469 and 9470 are separated by 168 nucleotides
9470 and 9471 are separated by 581 nucleotides
9471 and 9472 are separated by 986 nucleotides
mRNA_1100: 9468 - K14679 TRL1 tRNA ligase, at 402,585 to 405,523
9468
mRNA_1101: 9469 - KOG1206 Peroxisomal multifunctional beta-oxidation protein and related enzymes, at 405,793 to 407,272
9469
mRNA_1102: 9470 - K03327 TC.MATE, SLC47A, norM, mdtK, dinF multidrug resistance protein, MATE family, at 407,441 to 409,508
9470
mRNA_1103: 9471 - KOG0252 Inorganic phosphate transporter, at 410,090 to 412,457
9471
mRNA_1104: 9472 - K02540 MCM2 DNA replication licensing factor MCM2, at 413,444 to 416,551
9472
Group
Condition
mRNA
_1100
mRNA
_1101
mRNA
_1102
mRNA
_1103
mRNA
_1104
9468
9469
9470
9471
9472
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.3
-1.0
-1.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.8
-0.2
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.6
-0.1
+0.1
N.D.
growth on oleic acid
YNB Glucose
N.D.
-0.3
+0.3
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.3
+0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
-0.0
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
+0.4
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
-0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
+0.4
-0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
+0.3
-0.4
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
+0.4
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.4
+0.5
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
+0.5
-0.1
N.D.
auxotrophy
YNB Glucose
N.D.
+0.0
+0.4
-0.1
N.D.
auxotrophy
Dropout Complete
N.D.
-0.1
+0.7
-0.3
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.0
+0.4
+0.1
N.D.
growth on ypd
YPD
N.D.
+0.1
+0.6
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
-0.1
+0.5
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.4
+0.8
+0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
+0.4
+0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
+0.6
+0.8
N.D.
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