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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9474 and 9475 are separated by 390 nucleotides
9475 and 9476 are separated by 272 nucleotides
9476 and 9477 are separated by 205 nucleotides
9477 and 9478 are separated by 621 nucleotides
mRNA_1106: 9474 - Hypothetical Protein, at 418,669 to 421,245
9474
mRNA_1107: 9475 - KOG0123 Polyadenylate-binding protein (RRM superfamily), at 421,636 to 422,494
9475
mRNA_1108: 9476 - KOG1134 Uncharacterized conserved protein, at 422,767 to 426,748
9476
mRNA_1109: 9477 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 426,954 to 427,895
9477
mRNA_1110: 9478 - Hypothetical Protein, at 428,517 to 429,913
9478
Group
Condition
mRNA
_1106
mRNA
_1107
mRNA
_1108
mRNA
_1109
mRNA
_1110
9474
9475
9476
9477
9478
auxotrophy
Dropout Complete
N.D.
N.D.
-0.9
-0.3
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-1.0
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.7
-0.3
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.9
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.8
-0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.9
-0.4
+0.4
auxotrophy
YNB Glucose
N.D.
N.D.
-0.6
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.7
-0.3
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.7
+0.0
-0.1
growth on ypd
YPD
N.D.
N.D.
-0.6
+0.3
-0.4
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.8
+0.1
-0.0
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.4
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.3
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.3
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.3
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.7
-0.1
+0.6
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.3
+0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.2
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.1
-0.0
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.0
-0.0
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.0
+0.3
+0.1
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