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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9476 and 9477 are separated by 205 nucleotides
9477 and 9478 are separated by 621 nucleotides
9478 and 9479 are separated by 232 nucleotides
9479 and 9480 are separated by 322 nucleotides
mRNA_1108: 9476 - KOG1134 Uncharacterized conserved protein, at 422,767 to 426,748
9476
mRNA_1109: 9477 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 426,954 to 427,895
9477
mRNA_1110: 9478 - Hypothetical Protein, at 428,517 to 429,913
9478
mRNA_1111: 9479 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 430,146 to 432,940
9479
mRNA_1112: 9480 - Interpro Protein of unknown function (DUF3602) Protein of unknown function (DUF3602) 0, at 433,263 to 434,310
9480
Group
Condition
mRNA
_1108
mRNA
_1109
mRNA
_1110
mRNA
_1111
mRNA
_1112
9476
9477
9478
9479
9480
auxotrophy
Dropout Complete
-0.9
-0.3
-0.2
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-1.0
-0.1
-0.2
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.7
-0.3
-0.2
-0.2
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
-0.2
-0.1
+0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.8
-0.2
-0.1
-0.2
+0.0
growth on ypd
YPD
-0.6
+0.3
-0.4
-0.4
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
+0.0
-0.1
+0.0
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
-0.4
+0.4
-0.0
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
-0.3
+0.2
-0.1
-0.1
growth on oleic acid
YNB Glucose
-0.8
+0.1
-0.0
-0.2
-0.1
auxotrophy
YNB Glucose
-0.6
-0.1
-0.1
+0.1
+0.0
growth on oleic acid
YNB Oleic Acid
-0.4
+0.1
-0.2
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.1
+0.2
-0.4
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
-0.1
+0.6
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.1
+0.1
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.1
+0.1
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.0
+0.3
-0.3
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.1
+0.2
-0.0
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.2
+0.2
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.3
+0.1
-0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.0
+0.3
+0.1
+0.4
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