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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9477 and 9478 are separated by 621 nucleotides
9478 and 9479 are separated by 232 nucleotides
9479 and 9480 are separated by 322 nucleotides
9480 and 9481 are separated by 170 nucleotides
mRNA_1109: 9477 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 426,954 to 427,895
9477
mRNA_1110: 9478 - Hypothetical Protein, at 428,517 to 429,913
9478
mRNA_1111: 9479 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 430,146 to 432,940
9479
mRNA_1112: 9480 - Interpro Protein of unknown function (DUF3602) Protein of unknown function (DUF3602) 0, at 433,263 to 434,310
9480
mRNA_1113: 9481 - HMMPfam-Protein of unknown function (DUF3602)-PF12223, at 434,481 to 435,131
9481
Group
Condition
mRNA
_1109
mRNA
_1110
mRNA
_1111
mRNA
_1112
mRNA
_1113
9477
9478
9479
9480
9481
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
-0.4
+0.1
-1.4
growth on oleic acid
YNB Oleic Acid
+0.1
-0.2
-0.0
-0.1
-0.7
auxotrophy
Dropout Complete
-0.3
-0.2
-0.1
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.2
-0.2
-0.0
-0.1
growth on ypd
YPD
+0.3
-0.4
-0.4
-0.1
-0.0
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
-0.1
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
-0.0
+0.2
-0.6
growth on oleic acid
YNB Glucose
+0.1
-0.0
-0.2
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.1
+0.2
+0.3
-0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.3
-0.3
+0.2
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.4
-0.0
-0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
-0.0
+0.2
-0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
-0.2
+0.0
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.1
+0.2
-0.4
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.1
+0.0
-0.4
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.2
-0.1
-0.1
+0.4
auxotrophy
YNB Glucose
-0.1
-0.1
+0.1
+0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.1
-0.1
+0.3
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.2
-0.1
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.6
-0.4
+0.2
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.3
+0.1
+0.4
-0.0
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