Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 9478 and 9479 are separated by 232 nucleotides9479 and 9480 are separated by 322 nucleotides9480 and 9481 are separated by 170 nucleotides9481 and 9482 are separated by 250 nucleotides mRNA_1110: 9478 - Hypothetical Protein, at 428,517 to 429,913 9478 mRNA_1111: 9479 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 430,146 to 432,940 9479 mRNA_1112: 9480 - Interpro Protein of unknown function (DUF3602) Protein of unknown function (DUF3602) 0, at 433,263 to 434,310 9480 mRNA_1113: 9481 - HMMPfam-Protein of unknown function (DUF3602)-PF12223, at 434,481 to 435,131 9481 mRNA_1114: 9482 - KOG1396 Uncharacterized conserved protein, at 435,382 to 439,006 9482
Group Condition mRNA_1110 mRNA_1111 mRNA_1112 mRNA_1113 mRNA_1114
9478 9479 9480 9481 9482
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.2 -0.4 +0.1 -1.4 +0.3
growth on oleic acid YNB Oleic Acid -0.2 -0.0 -0.1 -0.7 +0.3
ypd buoyancy 40 hrs High Buoyancy +0.2 -0.0 +0.2 -0.6 -0.3
auxotrophy YNB Glucose 75mM Methionine -0.2 -0.2 -0.0 -0.1 -0.1
auxotrophy Dropout Complete -0.2 -0.1 -0.1 -0.2 +0.1
growth on ypd YPD -0.4 -0.4 -0.1 -0.0 +0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 +0.2 +0.3 -0.8 -0.2
facs on lipid accumulation Sorted High BODIPY Gate +0.4 -0.0 -0.2 -0.0 -0.4
growth on ricinoleic acid YNB Glucose -0.2 -0.1 -0.3 +0.1 +0.3
growth on oleic acid YNB Glucose -0.0 -0.2 -0.1 -0.2 +0.4
auxotrophy YNB Glucose 75mM Arginine -0.1 -0.2 +0.0 +0.3 -0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.1 -0.0 +0.2 -0.6 +0.3
ypd buoyancy 40 hrs Median Buoyancy +0.1 -0.1 +0.3 -0.2 -0.1
auxotrophy YNB Glucose -0.1 +0.1 +0.0 +0.1 -0.1
facs on lipid accumulation Sorted Low BODIPY Gate +0.2 -0.1 -0.1 +0.4 -0.2
ypd buoyancy 40 hrs Low Buoyancy +0.2 -0.1 +0.2 -0.1 -0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.3 -0.3 +0.2 -0.5 +0.6
facs on lipid accumulation Sorted No BODIPY Gate +0.6 -0.4 +0.2 +0.2 -0.2
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 +0.2 -0.4 +0.4 +0.4
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 +0.0 -0.4 +0.3 +0.7
ypd buoyancy 40 hrs No Buoyancy Separation +0.3 +0.1 +0.4 -0.0 +0.2
remove
mRNA_1110
plot
remove
mRNA_1111
plot
remove
mRNA_1112
remove
mRNA_1113
plot
remove
mRNA_1114
plot