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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9479 and 9480 are separated by 322 nucleotides
9480 and 9481 are separated by 170 nucleotides
9481 and 9482 are separated by 250 nucleotides
9482 and 9483 are separated by 337 nucleotides
mRNA_1111: 9479 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 430,146 to 432,940
9479
mRNA_1112: 9480 - Interpro Protein of unknown function (DUF3602) Protein of unknown function (DUF3602) 0, at 433,263 to 434,310
9480
mRNA_1113: 9481 - HMMPfam-Protein of unknown function (DUF3602)-PF12223, at 434,481 to 435,131
9481
mRNA_1114: 9482 - KOG1396 Uncharacterized conserved protein, at 435,382 to 439,006
9482
mRNA_1115: 9483 - SUPERFAMILY--SSF52047, at 439,344 to 441,081
9483
Group
Condition
mRNA
_1111
mRNA
_1112
mRNA
_1113
mRNA
_1114
mRNA
_1115
9479
9480
9481
9482
9483
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.1
-1.4
+0.3
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.2
-0.6
-0.3
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.2
-0.0
-0.4
-0.1
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
-0.7
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.3
-0.8
-0.2
+0.2
growth on ypd
YPD
-0.4
-0.1
-0.0
+0.3
-0.1
growth on oleic acid
YNB Glucose
-0.2
-0.1
-0.2
+0.4
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.3
-0.2
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.0
-0.1
-0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.1
+0.4
-0.2
-0.1
auxotrophy
Dropout Complete
-0.1
-0.1
-0.2
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.2
-0.6
+0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
-0.1
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.0
+0.3
-0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.2
+0.2
-0.2
+0.2
auxotrophy
YNB Glucose
+0.1
+0.0
+0.1
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
-0.1
-0.3
+0.1
+0.3
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.4
-0.0
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.2
-0.5
+0.6
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.4
+0.4
+0.4
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.4
+0.3
+0.7
+0.2
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