Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 9479 and 9480 are separated by 322 nucleotides9480 and 9481 are separated by 170 nucleotides9481 and 9482 are separated by 250 nucleotides9482 and 9483 are separated by 337 nucleotides mRNA_1111: 9479 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 430,146 to 432,940 9479 mRNA_1112: 9480 - Interpro Protein of unknown function (DUF3602) Protein of unknown function (DUF3602) 0, at 433,263 to 434,310 9480 mRNA_1113: 9481 - HMMPfam-Protein of unknown function (DUF3602)-PF12223, at 434,481 to 435,131 9481 mRNA_1114: 9482 - KOG1396 Uncharacterized conserved protein, at 435,382 to 439,006 9482 mRNA_1115: 9483 - SUPERFAMILY--SSF52047, at 439,344 to 441,081 9483
Group Condition mRNA_1111 mRNA_1112 mRNA_1113 mRNA_1114 mRNA_1115
9479 9480 9481 9482 9483
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.4 +0.1 -1.4 +0.3 +0.2
ypd buoyancy 40 hrs High Buoyancy -0.0 +0.2 -0.6 -0.3 -0.2
facs on lipid accumulation Sorted High BODIPY Gate -0.0 -0.2 -0.0 -0.4 -0.1
growth on oleic acid YNB Oleic Acid -0.0 -0.1 -0.7 +0.3 -0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.2 +0.3 -0.8 -0.2 +0.2
growth on ypd YPD -0.4 -0.1 -0.0 +0.3 -0.1
growth on oleic acid YNB Glucose -0.2 -0.1 -0.2 +0.4 -0.2
ypd buoyancy 40 hrs Median Buoyancy -0.1 +0.3 -0.2 -0.1 -0.1
auxotrophy YNB Glucose 75mM Methionine -0.2 -0.0 -0.1 -0.1 +0.3
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 -0.1 +0.4 -0.2 -0.1
auxotrophy Dropout Complete -0.1 -0.1 -0.2 +0.1 +0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.0 +0.2 -0.6 +0.3 +0.1
ypd buoyancy 40 hrs Low Buoyancy -0.1 +0.2 -0.1 -0.0 -0.1
auxotrophy YNB Glucose 75mM Arginine -0.2 +0.0 +0.3 -0.2 +0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.4 +0.2 +0.2 -0.2 +0.2
auxotrophy YNB Glucose +0.1 +0.0 +0.1 -0.1 +0.1
growth on ricinoleic acid YNB Glucose -0.1 -0.3 +0.1 +0.3 +0.3
ypd buoyancy 40 hrs No Buoyancy Separation +0.1 +0.4 -0.0 +0.2 -0.4
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.3 +0.2 -0.5 +0.6 +0.3
growth on ricinoleic acid YNB Ricinoleic Acid +0.2 -0.4 +0.4 +0.4 +0.2
growth on ricinoleic acid YNB Methylricinoleic Acid +0.0 -0.4 +0.3 +0.7 +0.2
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