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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9480 and 9481 are separated by 170 nucleotides
9481 and 9482 are separated by 250 nucleotides
9482 and 9483 are separated by 337 nucleotides
9483 and 9484 are separated by 253 nucleotides
mRNA_1112: 9480 - Interpro Protein of unknown function (DUF3602) Protein of unknown function (DUF3602) 0, at 433,263 to 434,310
9480
mRNA_1113: 9481 - HMMPfam-Protein of unknown function (DUF3602)-PF12223, at 434,481 to 435,131
9481
mRNA_1114: 9482 - KOG1396 Uncharacterized conserved protein, at 435,382 to 439,006
9482
mRNA_1115: 9483 - SUPERFAMILY--SSF52047, at 439,344 to 441,081
9483
mRNA_1116: 9484 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 441,335 to 443,528
9484
Group
Condition
mRNA
_1112
mRNA
_1113
mRNA
_1114
mRNA
_1115
mRNA
_1116
9480
9481
9482
9483
9484
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.6
-0.3
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.7
+0.3
-0.0
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-1.4
+0.3
+0.2
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.0
-0.4
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.8
-0.2
+0.2
+0.2
growth on oleic acid
YNB Glucose
-0.1
-0.2
+0.4
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.1
-0.1
+0.3
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.2
-0.1
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.3
-0.2
+0.1
-0.1
auxotrophy
Dropout Complete
-0.1
-0.2
+0.1
+0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
-0.0
-0.1
+0.1
auxotrophy
YNB Glucose
+0.0
+0.1
-0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.6
+0.3
+0.1
+0.3
growth on ricinoleic acid
YNB Glucose
-0.3
+0.1
+0.3
+0.3
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.4
-0.2
-0.1
+0.3
growth on ypd
YPD
-0.1
-0.0
+0.3
-0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.0
+0.2
-0.4
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.2
-0.2
+0.2
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.4
+0.4
+0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.3
+0.7
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.5
+0.6
+0.3
+0.2
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