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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9485 and 9486 are separated by 456 nucleotides
9486 and 9487 are separated by 677 nucleotides
9487 and 9488 are separated by 571 nucleotides
9488 and 9489 are separated by 149 nucleotides
mRNA_1117: 9485 - K13102 KIN DNA/RNA-binding protein KIN17, at 443,661 to 444,962
9485
mRNA_1118: 9486 - HMMPfam-RTA1 like protein-PF04479, at 445,419 to 446,946
9486
mRNA_1119: 9487 - Hypothetical Protein, at 447,624 to 448,229
9487
mRNA_1120: 9488 - KOG1612 Exosomal 3'-5' exoribonuclease complex, subunit Rrp42, at 448,801 to 450,033
9488
mRNA_1121: 9489 - K05389 KCNKF potassium channel subfamily K, other eukaryote, at 450,183 to 453,173
9489
Group
Condition
mRNA
_1117
mRNA
_1118
mRNA
_1119
mRNA
_1120
mRNA
_1121
9485
9486
9487
9488
9489
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.5
-0.0
N.D.
-1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-1.4
-0.4
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.5
-0.3
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.4
-0.6
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
-0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.4
-0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
-0.1
N.D.
-0.4
auxotrophy
YNB Glucose
N.D.
-0.3
-0.1
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
-0.0
N.D.
-0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.3
+0.1
N.D.
-0.5
growth on oleic acid
YNB Glucose
N.D.
-0.1
-0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
+0.0
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
-0.0
N.D.
-0.2
auxotrophy
Dropout Complete
N.D.
+0.0
+0.1
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.0
-0.3
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
-0.5
N.D.
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.2
-0.2
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.5
-0.0
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.9
-0.1
N.D.
-0.1
growth on ypd
YPD
N.D.
+1.3
-0.1
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+1.0
+0.4
N.D.
+0.0
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