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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9486 and 9487 are separated by 677 nucleotides
9487 and 9488 are separated by 571 nucleotides
9488 and 9489 are separated by 149 nucleotides
9489 and 9490 are separated by 286 nucleotides
mRNA_1118: 9486 - HMMPfam-RTA1 like protein-PF04479, at 445,419 to 446,946
9486
mRNA_1119: 9487 - Hypothetical Protein, at 447,624 to 448,229
9487
mRNA_1120: 9488 - KOG1612 Exosomal 3'-5' exoribonuclease complex, subunit Rrp42, at 448,801 to 450,033
9488
mRNA_1121: 9489 - K05389 KCNKF potassium channel subfamily K, other eukaryote, at 450,183 to 453,173
9489
mRNA_1122: 9490 - BLAST glycoside hydrolase family 28 protein [Tulasnella cal..., at 453,460 to 456,260
9490
Group
Condition
mRNA
_1118
mRNA
_1119
mRNA
_1120
mRNA
_1121
mRNA
_1122
9486
9487
9488
9489
9490
ypd buoyancy
40 hrs No Buoyancy Separation
-1.5
-0.0
N.D.
-1.0
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.4
-0.4
N.D.
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.5
-0.3
N.D.
-0.3
-0.2
growth on oleic acid
YNB Oleic Acid
-0.3
-0.1
N.D.
-0.2
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.6
N.D.
+0.0
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.1
N.D.
+0.1
-0.2
growth on ricinoleic acid
YNB Glucose
+0.2
-0.1
N.D.
-0.4
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.1
N.D.
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.5
N.D.
+0.4
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.0
N.D.
-0.4
+0.0
auxotrophy
YNB Glucose
-0.3
-0.1
N.D.
+0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+1.0
+0.4
N.D.
+0.0
-1.4
growth on oleic acid
YNB Glucose
-0.1
-0.1
N.D.
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.0
N.D.
+0.1
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.2
N.D.
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.3
N.D.
+0.3
+0.4
auxotrophy
Dropout Complete
+0.0
+0.1
N.D.
-0.1
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.0
N.D.
-0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.9
-0.1
N.D.
-0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.0
N.D.
-0.2
+1.0
growth on ypd
YPD
+1.3
-0.1
N.D.
-0.1
-0.1
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