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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9490 and 9491 are separated by 271 nucleotides
9491 and 9492 are separated by 455 nucleotides
9492 and 9493 are separated by 325 nucleotides
9493 and 9494 are separated by 346 nucleotides
mRNA_1122: 9490 - BLAST glycoside hydrolase family 28 protein [Tulasnella cal..., at 453,460 to 456,260
9490
mRNA_1123: 9491 - K00078 DHDH dihydrodiol dehydrogenase / D-xylose 1-dehydrogenase (NADP), at 456,532 to 457,918
9491
mRNA_1124: 9492 - K09613 COPS5, CSN5 COP9 signalosome complex subunit 5, at 458,374 to 459,990
9492
mRNA_1125: 9493 - K20465 OSBPL9_10_11, ORP9_10_11 oxysterol-binding protein-related protein 9/10/11, at 460,316 to 462,771
9493
mRNA_1126: 9494 - K15334 NCL1, TRM4 multisite-specific tRNA-(cytosine-C5)-methyltransferase, at 463,118 to 466,210
9494
Group
Condition
mRNA
_1122
mRNA
_1123
mRNA
_1124
mRNA
_1125
mRNA
_1126
9490
9491
9492
9493
9494
facs on lipid accumulation
Sorted High BODIPY Gate
-1.4
+0.1
-1.0
-0.5
-1.9
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.5
-1.0
-0.1
-1.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.9
-1.2
+0.3
+0.5
growth on oleic acid
YNB Oleic Acid
-0.6
-0.6
-0.5
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.4
+0.2
-0.7
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.0
+0.0
-0.3
-0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
-0.6
+0.4
-0.3
growth on oleic acid
YNB Glucose
+0.2
-0.3
-0.2
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.2
+0.0
-0.3
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
-0.4
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.4
+0.7
-0.2
-0.2
growth on ypd
YPD
-0.1
-0.0
-0.2
+0.4
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.2
-0.1
+0.2
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.0
-0.7
-0.2
+0.8
growth on ricinoleic acid
YNB Glucose
-0.1
+0.0
-0.0
-0.1
+0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.1
-0.5
-0.2
+1.1
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.0
-0.5
+0.2
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.3
-0.3
+0.2
+0.2
auxotrophy
YNB Glucose
+0.3
-0.2
-0.3
+0.2
+0.7
auxotrophy
Dropout Complete
+0.4
+0.0
+0.1
+0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.0
+0.6
+0.3
-0.2
-0.7
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