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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9492 and 9493 are separated by 325 nucleotides
9493 and 9494 are separated by 346 nucleotides
9494 and 9495 are separated by 283 nucleotides
9495 and 9496 are separated by 173 nucleotides
mRNA_1124: 9492 - K09613 COPS5, CSN5 COP9 signalosome complex subunit 5, at 458,374 to 459,990
9492
mRNA_1125: 9493 - K20465 OSBPL9_10_11, ORP9_10_11 oxysterol-binding protein-related protein 9/10/11, at 460,316 to 462,771
9493
mRNA_1126: 9494 - K15334 NCL1, TRM4 multisite-specific tRNA-(cytosine-C5)-methyltransferase, at 463,118 to 466,210
9494
mRNA_1127: 9495 - K00143 LYS2 L-aminoadipate-semialdehyde dehydrogenase, at 466,494 to 471,179
9495
mRNA_1128: 9496 - Interpro Arrestin (or S-antigen), N-terminal domain 0, at 471,353 to 475,855
9496
Group
Condition
mRNA
_1124
mRNA
_1125
mRNA
_1126
mRNA
_1127
mRNA
_1128
9492
9493
9494
9495
9496
facs on lipid accumulation
Sorted High BODIPY Gate
-1.0
-0.5
-1.9
-1.6
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-1.0
-0.1
-1.1
-1.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.3
-0.5
-1.5
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.3
-0.4
-1.4
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.2
-0.7
-1.7
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.7
-0.3
-1.2
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.2
+0.2
-1.5
-0.1
growth on oleic acid
YNB Glucose
-0.2
-0.3
-0.1
-1.2
+0.1
growth on ricinoleic acid
YNB Glucose
-0.0
-0.1
+0.7
-2.1
-0.1
growth on oleic acid
YNB Oleic Acid
-0.5
-0.1
+0.4
-1.3
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.2
+0.6
-1.7
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.2
+1.1
-1.7
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
-0.2
-0.2
-1.6
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
-0.2
+0.8
-1.3
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-1.2
+0.3
+0.5
-0.4
-0.1
auxotrophy
YNB Glucose
-0.3
+0.2
+0.7
-1.6
-0.0
auxotrophy
Dropout Complete
+0.1
+0.2
+0.1
-1.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.0
+0.1
-0.6
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.6
+0.4
-0.3
+0.1
+0.1
growth on ypd
YPD
-0.2
+0.4
-0.2
+0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
+0.4
-0.1
+0.1
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