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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9496 and 9497 are separated by 167 nucleotides
9497 and 9498 are separated by 701 nucleotides
9498 and 9499 are separated by 298 nucleotides
9499 and 9500 are separated by 368 nucleotides
mRNA_1128: 9496 - Interpro Arrestin (or S-antigen), N-terminal domain 0, at 471,353 to 475,855
9496
mRNA_1129: 9497 - K12391 AP1G1 AP-1 complex subunit gamma-1, at 476,023 to 479,289
9497
mRNA_1130: 9498 - KOG1773 Stress responsive protein, at 479,991 to 480,650
9498
mRNA_1131: 9499 - K01758 CTH cystathionine gamma-lyase, at 480,949 to 482,653
9499
mRNA_1132: 9500 - K20362 YIF1 protein transport protein YIF1, at 483,022 to 484,511
9500
Group
Condition
mRNA
_1128
mRNA
_1129
mRNA
_1130
mRNA
_1131
mRNA
_1132
9496
9497
9498
9499
9500
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-2.6
-2.1
+0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.4
-1.8
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-1.4
+0.2
-0.5
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.6
-0.7
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
-1.0
+0.0
N.D.
growth on ypd
YPD
-0.1
+0.5
-1.4
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
+0.3
-0.1
-0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
-0.3
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+1.0
-0.6
-0.5
N.D.
growth on oleic acid
YNB Glucose
+0.1
-0.0
+0.1
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.6
-0.4
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.5
-0.2
+0.2
N.D.
auxotrophy
YNB Glucose
-0.0
+0.3
+0.3
-0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.5
+0.1
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
+0.3
+0.8
+0.3
N.D.
auxotrophy
Dropout Complete
+0.1
+0.6
+0.7
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+1.6
+0.7
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.0
+2.8
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
+3.4
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.3
+3.7
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.6
+3.6
-0.0
N.D.
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