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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9505 and 9506 are separated by 462 nucleotides
9506 and 9507 are separated by 556 nucleotides
9507 and 9508 overlap by 9 nucleotides
9508 and 9509 are separated by 241 nucleotides
mRNA_1137: 9505 - KOG2363 Protein subunit of nuclear ribonuclease P (RNase P), at 493,433 to 494,833
9505
mRNA_1138: 9506 - K12598 MTR4, SKIV2L2 ATP-dependent RNA helicase DOB1, at 495,296 to 498,898
9506
mRNA_1139: 9507 - KOG0948 Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily, at 499,455 to 501,152
9507
mRNA_1140: 9508 - Hypothetical Protein, at 501,144 to 502,364
9508
mRNA_1141: 9509 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 502,606 to 503,454
9509
Group
Condition
mRNA
_1137
mRNA
_1138
mRNA
_1139
mRNA
_1140
mRNA
_1141
9505
9506
9507
9508
9509
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.7
-0.2
-1.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-1.2
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-1.4
-0.3
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.1
-0.4
-0.8
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.1
+0.1
-1.2
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.3
-0.1
-0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.4
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.1
+0.2
-1.0
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.1
-0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.3
-0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.3
+0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.9
+0.0
-0.6
auxotrophy
YNB Glucose
N.D.
N.D.
+0.3
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.5
-0.0
+0.9
auxotrophy
Dropout Complete
N.D.
N.D.
+0.5
+0.3
-0.4
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.5
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.3
+0.0
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.4
-0.2
+0.8
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.5
-0.2
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.5
+0.2
+0.7
growth on ypd
YPD
N.D.
N.D.
+2.0
+0.2
+0.8
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