Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 9507 and 9508 overlap by 9 nucleotides9508 and 9509 are separated by 241 nucleotides9509 and 9510 are separated by 132 nucleotides9510 and 9511 are separated by 362 nucleotides mRNA_1139: 9507 - KOG0948 Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily, at 499,455 to 501,152 9507 mRNA_1140: 9508 - Hypothetical Protein, at 501,144 to 502,364 9508 mRNA_1141: 9509 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 502,606 to 503,454 9509 mRNA_1142: 9510 - K03139 TFIIF2, GTF2F2, TFG2 transcription initiation factor TFIIF subunit beta, at 503,587 to 505,304 9510 mRNA_1143: 9511 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 505,667 to 510,461 9511
Group Condition mRNA_1139 mRNA_1140 mRNA_1141 mRNA_1142 mRNA_1143
9507 9508 9509 9510 9511
ypd buoyancy 40 hrs No Buoyancy Separation -0.7 -0.2 -1.3 N.D. -0.0
ypd buoyancy 40 hrs High Buoyancy -1.2 -0.1 -0.5 N.D. -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -1.4 -0.3 +0.2 N.D. +0.1
auxotrophy YNB Glucose 75mM Methionine +0.1 +0.1 -1.2 N.D. -0.1
growth on oleic acid YNB Glucose -0.3 -0.1 -0.4 N.D. -0.2
facs on lipid accumulation Sorted Low BODIPY Gate +0.1 -0.4 -0.8 N.D. +0.1
ypd buoyancy 40 hrs Low Buoyancy -0.4 -0.2 -0.2 N.D. -0.2
growth on oleic acid YNB Oleic Acid -0.1 -0.1 -0.3 N.D. -0.3
auxotrophy YNB Glucose 75mM Arginine +0.1 +0.2 -1.0 N.D. -0.1
ypd buoyancy 40 hrs Median Buoyancy -0.3 -0.2 +0.1 N.D. -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid +0.3 +0.1 -0.2 N.D. -0.1
auxotrophy Dropout Complete +0.5 +0.3 -0.4 N.D. -0.2
auxotrophy YNB Glucose +0.3 +0.4 -0.3 N.D. -0.0
growth on ricinoleic acid YNB Ricinoleic Acid +0.9 +0.0 -0.6 N.D. +0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.5 -0.0 +0.9 N.D. -0.0
growth on ricinoleic acid YNB Glucose +0.5 +0.1 +0.2 N.D. +0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.3 +0.0 +0.5 N.D. +0.0
facs on lipid accumulation Sorted No BODIPY Gate +0.4 -0.2 +0.8 N.D. -0.0
facs on lipid accumulation Sorted High BODIPY Gate +0.5 -0.2 +0.7 N.D. -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.5 +0.2 +0.7 N.D. +0.1
growth on ypd YPD +2.0 +0.2 +0.8 N.D. -0.1
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