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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9507 and 9508 overlap by 9 nucleotides
9508 and 9509 are separated by 241 nucleotides
9509 and 9510 are separated by 132 nucleotides
9510 and 9511 are separated by 362 nucleotides
mRNA_1139: 9507 - KOG0948 Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily, at 499,455 to 501,152
9507
mRNA_1140: 9508 - Hypothetical Protein, at 501,144 to 502,364
9508
mRNA_1141: 9509 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 502,606 to 503,454
9509
mRNA_1142: 9510 - K03139 TFIIF2, GTF2F2, TFG2 transcription initiation factor TFIIF subunit beta, at 503,587 to 505,304
9510
mRNA_1143: 9511 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 505,667 to 510,461
9511
Group
Condition
mRNA
_1139
mRNA
_1140
mRNA
_1141
mRNA
_1142
mRNA
_1143
9507
9508
9509
9510
9511
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-0.2
-1.3
N.D.
-0.0
ypd buoyancy
40 hrs High Buoyancy
-1.2
-0.1
-0.5
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.4
-0.3
+0.2
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
-1.2
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.3
-0.1
-0.4
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.4
-0.8
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-0.2
-0.2
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
-0.3
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.2
-1.0
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.2
+0.1
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.1
-0.2
N.D.
-0.1
auxotrophy
Dropout Complete
+0.5
+0.3
-0.4
N.D.
-0.2
auxotrophy
YNB Glucose
+0.3
+0.4
-0.3
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.9
+0.0
-0.6
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.0
+0.9
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
+0.5
+0.1
+0.2
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.0
+0.5
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.2
+0.8
N.D.
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-0.2
+0.7
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.2
+0.7
N.D.
+0.1
growth on ypd
YPD
+2.0
+0.2
+0.8
N.D.
-0.1
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