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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9508 and 9509 are separated by 241 nucleotides
9509 and 9510 are separated by 132 nucleotides
9510 and 9511 are separated by 362 nucleotides
9511 and 9512 are separated by 104 nucleotides
mRNA_1140: 9508 - Hypothetical Protein, at 501,144 to 502,364
9508
mRNA_1141: 9509 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 502,606 to 503,454
9509
mRNA_1142: 9510 - K03139 TFIIF2, GTF2F2, TFG2 transcription initiation factor TFIIF subunit beta, at 503,587 to 505,304
9510
mRNA_1143: 9511 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 505,667 to 510,461
9511
mRNA_1144: 9512 - K13355 NUDT19 nucleoside diphosphate-linked moiety X motif 19, mitochondrial, at 510,566 to 511,961
9512
Group
Condition
mRNA
_1140
mRNA
_1141
mRNA
_1142
mRNA
_1143
mRNA
_1144
9508
9509
9510
9511
9512
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-1.3
N.D.
-0.0
-0.9
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-1.2
N.D.
-0.1
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.8
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-1.0
N.D.
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.3
N.D.
-0.3
-0.2
growth on oleic acid
YNB Glucose
-0.1
-0.4
N.D.
-0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.2
N.D.
-0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.5
N.D.
-0.1
-0.1
auxotrophy
Dropout Complete
+0.3
-0.4
N.D.
-0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
N.D.
-0.1
-0.1
auxotrophy
YNB Glucose
+0.4
-0.3
N.D.
-0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.2
N.D.
-0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.6
N.D.
+0.0
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.2
N.D.
+0.1
+0.5
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
N.D.
+0.0
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.8
N.D.
-0.0
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.7
N.D.
-0.1
+0.2
growth on ypd
YPD
+0.2
+0.8
N.D.
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.5
N.D.
+0.0
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.9
N.D.
-0.0
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.7
N.D.
+0.1
+0.6
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