Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 9509 and 9510 are separated by 132 nucleotides9510 and 9511 are separated by 362 nucleotides9511 and 9512 are separated by 104 nucleotides9512 and 9513 are separated by 772 nucleotides mRNA_1141: 9509 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 502,606 to 503,454 9509 mRNA_1142: 9510 - K03139 TFIIF2, GTF2F2, TFG2 transcription initiation factor TFIIF subunit beta, at 503,587 to 505,304 9510 mRNA_1143: 9511 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 505,667 to 510,461 9511 mRNA_1144: 9512 - K13355 NUDT19 nucleoside diphosphate-linked moiety X motif 19, mitochondrial, at 510,566 to 511,961 9512 mRNA_1145: 9513 - K00669 AANAT arylalkylamine N-acetyltransferase, at 512,734 to 513,942 9513
Group Condition mRNA_1141 mRNA_1142 mRNA_1143 mRNA_1144 mRNA_1145
9509 9510 9511 9512 9513
ypd buoyancy 40 hrs No Buoyancy Separation -1.3 N.D. -0.0 -0.9 -0.3
facs on lipid accumulation Sorted Low BODIPY Gate -0.8 N.D. +0.1 -0.1 -0.8
auxotrophy YNB Glucose 75mM Methionine -1.2 N.D. -0.1 -0.4 +0.3
ypd buoyancy 40 hrs Low Buoyancy -0.2 N.D. -0.2 -0.2 -0.3
ypd buoyancy 40 hrs High Buoyancy -0.5 N.D. -0.1 -0.1 -0.2
growth on oleic acid YNB Oleic Acid -0.3 N.D. -0.3 -0.2 -0.0
auxotrophy YNB Glucose 75mM Arginine -1.0 N.D. -0.1 -0.1 +0.5
growth on oleic acid YNB Glucose -0.4 N.D. -0.2 -0.1 +0.3
auxotrophy YNB Glucose -0.3 N.D. -0.0 -0.2 +0.2
ypd buoyancy 40 hrs Median Buoyancy +0.1 N.D. -0.1 -0.1 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 N.D. -0.1 +0.3 +0.1
auxotrophy Dropout Complete -0.4 N.D. -0.2 -0.2 +0.8
growth on ricinoleic acid YNB Glucose +0.2 N.D. +0.0 +0.4 -0.3
facs on lipid accumulation Sorted No BODIPY Gate +0.8 N.D. -0.0 +0.0 -0.5
growth on ricinoleic acid YNB Ricinoleic Acid -0.6 N.D. +0.0 +0.6 +0.5
facs on lipid accumulation Sorted High BODIPY Gate +0.7 N.D. -0.1 +0.2 -0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.2 N.D. +0.1 +0.5 -0.2
growth on ypd YPD +0.8 N.D. -0.1 -0.0 +0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.5 N.D. +0.0 +0.5 +0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.9 N.D. -0.0 +0.5 -0.4
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.7 N.D. +0.1 +0.6 +0.0
remove
mRNA_1141
plot
remove
mRNA_1142
plot
remove
mRNA_1143
remove
mRNA_1144
plot
remove
mRNA_1145
plot