Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
9509 and 9510 are separated by 132 nucleotides
9510 and 9511 are separated by 362 nucleotides
9511 and 9512 are separated by 104 nucleotides
9512 and 9513 are separated by 772 nucleotides
mRNA_1141: 9509 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 502,606 to 503,454
9509
mRNA_1142: 9510 - K03139 TFIIF2, GTF2F2, TFG2 transcription initiation factor TFIIF subunit beta, at 503,587 to 505,304
9510
mRNA_1143: 9511 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 505,667 to 510,461
9511
mRNA_1144: 9512 - K13355 NUDT19 nucleoside diphosphate-linked moiety X motif 19, mitochondrial, at 510,566 to 511,961
9512
mRNA_1145: 9513 - K00669 AANAT arylalkylamine N-acetyltransferase, at 512,734 to 513,942
9513
Group
Condition
mRNA
_1141
mRNA
_1142
mRNA
_1143
mRNA
_1144
mRNA
_1145
9509
9510
9511
9512
9513
ypd buoyancy
40 hrs No Buoyancy Separation
-1.3
N.D.
-0.0
-0.9
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
N.D.
+0.1
-0.1
-0.8
auxotrophy
YNB Glucose 75mM Methionine
-1.2
N.D.
-0.1
-0.4
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
-0.2
-0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.5
N.D.
-0.1
-0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.3
N.D.
-0.3
-0.2
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-1.0
N.D.
-0.1
-0.1
+0.5
growth on oleic acid
YNB Glucose
-0.4
N.D.
-0.2
-0.1
+0.3
auxotrophy
YNB Glucose
-0.3
N.D.
-0.0
-0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.1
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
-0.1
+0.3
+0.1
auxotrophy
Dropout Complete
-0.4
N.D.
-0.2
-0.2
+0.8
growth on ricinoleic acid
YNB Glucose
+0.2
N.D.
+0.0
+0.4
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.8
N.D.
-0.0
+0.0
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
N.D.
+0.0
+0.6
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
N.D.
-0.1
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
+0.1
+0.5
-0.2
growth on ypd
YPD
+0.8
N.D.
-0.1
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
N.D.
+0.0
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.9
N.D.
-0.0
+0.5
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
N.D.
+0.1
+0.6
+0.0
remove
mRNA_1141
plot
remove
mRNA_1142
plot
remove
mRNA_1143
remove
mRNA_1144
plot
remove
mRNA_1145
plot