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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9511 and 9512 are separated by 104 nucleotides
9512 and 9513 are separated by 772 nucleotides
9513 and 9514 are separated by 449 nucleotides
9514 and 9515 are separated by 294 nucleotides
mRNA_1143: 9511 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 505,667 to 510,461
9511
mRNA_1144: 9512 - K13355 NUDT19 nucleoside diphosphate-linked moiety X motif 19, mitochondrial, at 510,566 to 511,961
9512
mRNA_1145: 9513 - K00669 AANAT arylalkylamine N-acetyltransferase, at 512,734 to 513,942
9513
mRNA_1146: 9514 - K06682 TEM1 Gtp-binding protein of the ras superfamily involved in termination of M-phase, at 514,392 to 515,549
9514
mRNA_1147: 9515 - KOG0069 Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily), at 515,844 to 517,256
9515
Group
Condition
mRNA
_1143
mRNA
_1144
mRNA
_1145
mRNA
_1146
mRNA
_1147
9511
9512
9513
9514
9515
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.9
-0.3
-0.3
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.2
-0.3
-0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
-0.1
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
-0.3
-0.2
-0.0
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.5
-0.4
-0.0
-0.6
growth on oleic acid
YNB Glucose
-0.2
-0.1
+0.3
-0.4
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.0
-0.5
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.5
-0.2
-0.2
-0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.4
+0.3
-0.3
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
-0.2
+0.3
-0.1
growth on ricinoleic acid
YNB Glucose
+0.0
+0.4
-0.3
-0.3
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.2
-0.3
-0.0
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.1
-0.8
+0.5
+0.3
growth on ypd
YPD
-0.1
-0.0
+0.0
+0.6
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.6
+0.0
-0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
+0.5
-0.2
+0.1
auxotrophy
YNB Glucose
-0.0
-0.2
+0.2
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.5
+0.1
-0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.3
+0.1
-0.2
+0.4
auxotrophy
Dropout Complete
-0.2
-0.2
+0.8
-0.1
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.6
+0.5
+0.3
-0.2
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