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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9513 and 9514 are separated by 449 nucleotides
9514 and 9515 are separated by 294 nucleotides
9515 and 9516 are separated by 459 nucleotides
9516 and 9517 are separated by 701 nucleotides
mRNA_1145: 9513 - K00669 AANAT arylalkylamine N-acetyltransferase, at 512,734 to 513,942
9513
mRNA_1146: 9514 - K06682 TEM1 Gtp-binding protein of the ras superfamily involved in termination of M-phase, at 514,392 to 515,549
9514
mRNA_1147: 9515 - KOG0069 Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily), at 515,844 to 517,256
9515
mRNA_1148: 9516 - K02923 RP-L38e, RPL38 large subunit ribosomal protein L38e, at 517,716 to 518,527
9516
mRNA_1149: 9517 - Hypothetical Protein, at 519,229 to 520,018
9517
Group
Condition
mRNA
_1145
mRNA
_1146
mRNA
_1147
mRNA
_1148
mRNA
_1149
9513
9514
9515
9516
9517
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.3
-0.5
N.D.
-1.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.0
-0.6
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.2
-0.5
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.0
-0.1
N.D.
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.0
+0.2
N.D.
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.2
+0.0
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
-0.3
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
+0.5
+0.3
N.D.
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.3
-0.1
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.2
-0.4
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
-0.3
-0.3
+0.2
N.D.
+0.3
growth on ypd
YPD
+0.0
+0.6
-0.4
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
-0.2
N.D.
+0.2
growth on oleic acid
YNB Glucose
+0.3
-0.4
+0.1
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.3
+0.3
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
-0.0
-0.2
+0.2
N.D.
+0.2
auxotrophy
YNB Glucose
+0.2
+0.1
+0.2
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.2
+0.4
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.5
-0.2
+0.1
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.3
-0.2
N.D.
+0.5
auxotrophy
Dropout Complete
+0.8
-0.1
+0.0
N.D.
+0.3
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