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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9516 and 9517 are separated by 701 nucleotides
9517 and 9518 are separated by 264 nucleotides
9518 and 9519 are separated by 940 nucleotides
9519 and 9520 are separated by 537 nucleotides
mRNA_1148: 9516 - K02923 RP-L38e, RPL38 large subunit ribosomal protein L38e, at 517,716 to 518,527
9516
mRNA_1149: 9517 - Hypothetical Protein, at 519,229 to 520,018
9517
mRNA_1150: 9518 - Hypothetical Protein, at 520,283 to 520,867
9518
mRNA_1151: 9519 - Hypothetical Protein, at 521,808 to 522,539
9519
mRNA_1152: 9520 - KOG0069 Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily), at 523,077 to 524,441
9520
Group
Condition
mRNA
_1148
mRNA
_1149
mRNA
_1150
mRNA
_1151
mRNA
_1152
9516
9517
9518
9519
9520
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.1
+0.4
-2.0
-0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.3
+0.3
-0.9
-0.2
growth on ypd
YPD
N.D.
-0.3
+0.1
-0.9
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.1
-0.4
-0.2
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
-0.2
-0.4
-0.1
auxotrophy
YNB Glucose
N.D.
+0.1
-0.3
-0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.3
-0.1
+0.3
-0.3
growth on oleic acid
YNB Glucose
N.D.
+0.0
-0.0
-0.3
-0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
-0.2
+0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.5
+0.4
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.5
+0.4
+0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.4
-0.3
-0.7
+0.6
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.3
-0.1
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
-0.8
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
-0.1
+0.3
-0.1
auxotrophy
Dropout Complete
N.D.
+0.3
-0.4
+0.4
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.4
-0.1
+1.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.5
-0.6
+0.4
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.3
-0.2
+0.4
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.5
+1.1
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
+0.0
+0.8
+0.3
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