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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9517 and 9518 are separated by 264 nucleotides
9518 and 9519 are separated by 940 nucleotides
9519 and 9520 are separated by 537 nucleotides
9520 and 9521 are separated by 108 nucleotides
mRNA_1149: 9517 - Hypothetical Protein, at 519,229 to 520,018
9517
mRNA_1150: 9518 - Hypothetical Protein, at 520,283 to 520,867
9518
mRNA_1151: 9519 - Hypothetical Protein, at 521,808 to 522,539
9519
mRNA_1152: 9520 - KOG0069 Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily), at 523,077 to 524,441
9520
mRNA_1153: 9521 - K13513 LCLAT1, AGPAT8 lysocardiolipin and lysophospholipid acyltransferase, at 524,550 to 526,104
9521
Group
Condition
mRNA
_1149
mRNA
_1150
mRNA
_1151
mRNA
_1152
mRNA
_1153
9517
9518
9519
9520
9521
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
+0.4
-2.0
-0.4
-2.0
growth on ypd
YPD
-0.3
+0.1
-0.9
+0.0
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.3
-0.9
-0.2
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.4
+0.1
-0.1
-0.7
auxotrophy
YNB Glucose
+0.1
-0.3
-0.0
-0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
-0.4
-0.2
+0.2
growth on oleic acid
YNB Oleic Acid
+0.2
-0.2
-0.4
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.2
+0.3
-0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.5
+0.4
+0.1
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
+0.3
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.1
-0.1
-0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.1
+0.3
-0.3
+0.2
auxotrophy
Dropout Complete
+0.3
-0.4
+0.4
+0.1
-0.2
growth on oleic acid
YNB Glucose
+0.0
-0.0
-0.3
-0.0
+0.5
growth on ricinoleic acid
YNB Glucose
+0.3
-0.8
+0.2
+0.3
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.3
-0.7
+0.6
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.5
+1.1
+0.6
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.2
+0.4
+0.3
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.1
+1.2
-0.2
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.0
+0.8
+0.3
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.6
+0.4
+0.5
+0.7
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