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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9519 and 9520 are separated by 537 nucleotides
9520 and 9521 are separated by 108 nucleotides
9521 and 9522 are separated by 492 nucleotides
9522 and 9523 are separated by 838 nucleotides
mRNA_1151: 9519 - Hypothetical Protein, at 521,808 to 522,539
9519
mRNA_1152: 9520 - KOG0069 Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily), at 523,077 to 524,441
9520
mRNA_1153: 9521 - K13513 LCLAT1, AGPAT8 lysocardiolipin and lysophospholipid acyltransferase, at 524,550 to 526,104
9521
mRNA_1154: 9522 - Hypothetical Protein, at 526,597 to 527,643
9522
mRNA_1155: 9523 - ProSiteProfiles-CBS domain profile.-PS51371,SUPERFAMILY--SSF54631, at 528,482 to 529,504
9523
Group
Condition
mRNA
_1151
mRNA
_1152
mRNA
_1153
mRNA
_1154
mRNA
_1155
9519
9520
9521
9522
9523
ypd buoyancy
40 hrs No Buoyancy Separation
-2.0
-0.4
-2.0
-0.6
-0.2
growth on ypd
YPD
-0.9
+0.0
-0.6
-0.2
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.9
-0.2
+0.3
-0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
+0.6
+0.3
-0.4
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.4
-0.2
+0.2
-0.3
+0.4
growth on oleic acid
YNB Oleic Acid
-0.4
-0.1
+0.2
-0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.1
-0.7
+0.7
-0.1
growth on ricinoleic acid
YNB Glucose
+0.2
+0.3
+0.3
-0.2
-0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
-0.2
-0.2
+0.7
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
-0.2
-0.0
+0.4
auxotrophy
YNB Glucose
-0.0
-0.1
-0.3
+0.3
+0.5
growth on oleic acid
YNB Glucose
-0.3
-0.0
+0.5
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.1
-0.3
+0.5
+0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.1
-0.0
+0.3
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.5
+0.7
-0.4
-0.1
auxotrophy
Dropout Complete
+0.4
+0.1
-0.2
+0.2
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.8
+0.3
-0.3
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.3
-0.0
+0.6
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.3
+0.2
+0.2
+0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.2
-0.2
+0.4
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.1
+0.6
-0.5
+0.4
+0.5
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