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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9524 and 9525 are separated by 404 nucleotides
9525 and 9526 are separated by 514 nucleotides
9526 and 9527 are separated by 675 nucleotides
9527 and 9528 are separated by 32 nucleotides
mRNA_1156: 9524 - Hypothetical Protein, at 530,031 to 531,445
9524
mRNA_1157: 9525 - K14818 SQT1 ribosome assembly protein SQT1, at 531,850 to 533,484
9525
mRNA_1158: 9526 - Hypothetical Protein, at 533,999 to 537,881
9526
mRNA_1159: 9527 - HMMPfam-Archaeal ATPase-PF01637,SUPERFAMILY--SSF52540, at 538,557 to 540,883
9527
mRNA_1160: 9528 - KOG4159 Predicted E3 ubiquitin ligase, at 540,916 to 543,538
9528
Group
Condition
mRNA
_1156
mRNA
_1157
mRNA
_1158
mRNA
_1159
mRNA
_1160
9524
9525
9526
9527
9528
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
+0.3
+0.1
-1.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
+0.5
-0.3
-1.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
-0.2
-0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
N.D.
+0.0
-0.2
-0.5
growth on oleic acid
YNB Glucose
-0.0
N.D.
+0.0
+0.1
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
+0.0
-0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
+0.2
-0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
N.D.
+0.1
+0.0
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.0
N.D.
+0.2
-0.4
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.3
N.D.
+0.1
-0.0
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
+0.3
+0.2
-0.8
auxotrophy
Dropout Complete
+0.1
N.D.
-0.0
+0.3
-0.2
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.2
+0.0
-0.1
growth on ypd
YPD
+0.2
N.D.
+0.2
+0.0
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
+0.1
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
+0.0
+0.4
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
N.D.
+0.5
+0.1
+0.1
auxotrophy
YNB Glucose
+0.6
N.D.
+0.2
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
N.D.
+0.0
+0.4
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
+0.2
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
+0.2
+0.2
+0.7
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