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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9527 and 9528 are separated by 32 nucleotides
9528 and 9529 are separated by 444 nucleotides
9529 and 9530 are separated by 403 nucleotides
9530 and 9531 are separated by 442 nucleotides
mRNA_1159: 9527 - HMMPfam-Archaeal ATPase-PF01637,SUPERFAMILY--SSF52540, at 538,557 to 540,883
9527
mRNA_1160: 9528 - KOG4159 Predicted E3 ubiquitin ligase, at 540,916 to 543,538
9528
mRNA_1161: 9529 - K03028 PSMD2, RPN1 26S proteasome regulatory subunit N1, at 543,983 to 547,395
9529
mRNA_1162: 9530 - SUPERFAMILY--SSF52047, at 547,799 to 548,923
9530
mRNA_1163: 9531 - KOG1378 Purple acid phosphatase, at 549,366 to 551,873
9531
Group
Condition
mRNA
_1159
mRNA
_1160
mRNA
_1161
mRNA
_1162
mRNA
_1163
9527
9528
9529
9530
9531
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-1.2
N.D.
-0.7
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-1.0
N.D.
-0.3
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.5
N.D.
+0.0
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
N.D.
+0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
N.D.
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.4
N.D.
+0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.0
N.D.
-0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
N.D.
-0.0
-0.1
growth on ypd
YPD
+0.0
-0.1
N.D.
-0.1
-0.0
growth on oleic acid
YNB Glucose
+0.1
-0.4
N.D.
+0.1
-0.0
growth on oleic acid
YNB Oleic Acid
+0.0
-0.1
N.D.
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.8
N.D.
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.4
N.D.
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.1
N.D.
-0.1
-0.0
auxotrophy
YNB Glucose
+0.2
-0.4
N.D.
+0.3
+0.1
growth on ricinoleic acid
YNB Glucose
+0.2
-0.1
N.D.
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.3
N.D.
-0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.1
N.D.
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.7
N.D.
-0.4
-0.0
auxotrophy
Dropout Complete
+0.3
-0.2
N.D.
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.6
N.D.
+0.1
+0.1
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