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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9529 and 9530 are separated by 403 nucleotides
9530 and 9531 are separated by 442 nucleotides
9531 and 9532 are separated by 836 nucleotides
9532 and 9533 are separated by 430 nucleotides
mRNA_1161: 9529 - K03028 PSMD2, RPN1 26S proteasome regulatory subunit N1, at 543,983 to 547,395
9529
mRNA_1162: 9530 - SUPERFAMILY--SSF52047, at 547,799 to 548,923
9530
mRNA_1163: 9531 - KOG1378 Purple acid phosphatase, at 549,366 to 551,873
9531
mRNA_1164: 9532 - Hypothetical Protein, at 552,710 to 552,960
9532
mRNA_1165: 9533 - HMMPfam-Protein of unknown function (DUF1445)-PF07286,PIRSF--PIRSF029755,SUPERFAMILY--SSF160920, at 553,391 to 554,372
9533
Group
Condition
mRNA
_1161
mRNA
_1162
mRNA
_1163
mRNA
_1164
mRNA
_1165
9529
9530
9531
9532
9533
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.7
-0.8
+0.2
-1.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.3
-0.2
+0.0
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.0
-0.2
-0.0
-0.1
growth on ypd
YPD
N.D.
-0.1
-0.0
+0.2
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
-0.1
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.4
-0.0
+0.5
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
-0.0
+0.2
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.2
-0.2
+0.3
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-0.3
+0.3
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
-0.1
+0.0
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.0
+0.6
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
-0.1
+0.2
+0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
+0.2
+0.4
-0.1
auxotrophy
YNB Glucose
N.D.
+0.3
+0.1
-0.0
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.3
+0.1
-0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
+0.1
+0.3
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
+0.2
+0.1
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.1
-0.0
+0.0
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.4
-0.2
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
+0.1
+0.5
+0.2
auxotrophy
Dropout Complete
N.D.
+0.3
+0.3
+0.2
+0.4
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