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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9531 and 9532 are separated by 836 nucleotides
9532 and 9533 are separated by 430 nucleotides
9533 and 9534 are separated by 415 nucleotides
9534 and 9535 are separated by 526 nucleotides
mRNA_1163: 9531 - KOG1378 Purple acid phosphatase, at 549,366 to 551,873
9531
mRNA_1164: 9532 - Hypothetical Protein, at 552,710 to 552,960
9532
mRNA_1165: 9533 - HMMPfam-Protein of unknown function (DUF1445)-PF07286,PIRSF--PIRSF029755,SUPERFAMILY--SSF160920, at 553,391 to 554,372
9533
mRNA_1166: 9534 - KOG2533 Permease of the major facilitator superfamily, at 554,788 to 557,060
9534
mRNA_1167: 9535 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 557,587 to 560,660
9535
Group
Condition
mRNA
_1163
mRNA
_1164
mRNA
_1165
mRNA
_1166
mRNA
_1167
9531
9532
9533
9534
9535
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
+0.2
-1.4
-0.4
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.0
-0.1
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.0
+0.0
-0.0
-0.4
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
-0.1
-0.3
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.3
-0.0
-0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.4
+0.1
-0.0
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.3
+0.2
+0.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.1
+0.1
-0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.4
-0.1
-0.3
-0.0
auxotrophy
YNB Glucose
+0.1
-0.0
+0.0
-0.2
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
+0.1
-0.4
+0.3
growth on oleic acid
YNB Oleic Acid
-0.1
+0.0
+0.5
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.2
+0.3
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.6
-0.1
+0.1
-0.0
growth on ypd
YPD
-0.0
+0.2
+0.1
+0.1
+0.3
growth on oleic acid
YNB Glucose
-0.0
+0.0
+0.5
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.5
+0.2
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.2
+0.3
+0.0
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.5
+0.2
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.3
+0.2
+0.0
+0.4
auxotrophy
Dropout Complete
+0.3
+0.2
+0.4
-0.3
+0.5
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