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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9532 and 9533 are separated by 430 nucleotides
9533 and 9534 are separated by 415 nucleotides
9534 and 9535 are separated by 526 nucleotides
9535 and 9536 are separated by 223 nucleotides
mRNA_1164: 9532 - Hypothetical Protein, at 552,710 to 552,960
9532
mRNA_1165: 9533 - HMMPfam-Protein of unknown function (DUF1445)-PF07286,PIRSF--PIRSF029755,SUPERFAMILY--SSF160920, at 553,391 to 554,372
9533
mRNA_1166: 9534 - KOG2533 Permease of the major facilitator superfamily, at 554,788 to 557,060
9534
mRNA_1167: 9535 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 557,587 to 560,660
9535
mRNA_1168: 9536 - K01474 hyuB N-methylhydantoinase B, at 560,884 to 563,023
9536
Group
Condition
mRNA
_1164
mRNA
_1165
mRNA
_1166
mRNA
_1167
mRNA
_1168
9532
9533
9534
9535
9536
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-1.4
-0.4
-0.4
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
-0.3
+0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.0
-0.1
-0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.1
-0.1
-0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.1
-0.3
-0.0
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.1
-0.2
+0.2
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.0
-0.0
-0.4
+0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.1
-0.0
-0.5
+0.3
growth on oleic acid
YNB Oleic Acid
+0.0
+0.5
-0.4
+0.2
+0.2
auxotrophy
YNB Glucose
-0.0
+0.0
-0.2
+0.3
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
-0.4
+0.3
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.3
+0.2
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.2
+0.2
-0.2
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.2
+0.0
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.2
+0.1
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
-0.1
+0.1
-0.0
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.3
+0.0
+0.3
+0.1
growth on oleic acid
YNB Glucose
+0.0
+0.5
-0.1
+0.2
+0.4
auxotrophy
Dropout Complete
+0.2
+0.4
-0.3
+0.5
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.2
+0.0
+0.4
+0.3
growth on ypd
YPD
+0.2
+0.1
+0.1
+0.3
+0.7
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