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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9534 and 9535 are separated by 526 nucleotides
9535 and 9536 are separated by 223 nucleotides
9536 and 9537 are separated by 523 nucleotides
9537 and 9538 are separated by 28 nucleotides
mRNA_1166: 9534 - KOG2533 Permease of the major facilitator superfamily, at 554,788 to 557,060
9534
mRNA_1167: 9535 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 557,587 to 560,660
9535
mRNA_1168: 9536 - K01474 hyuB N-methylhydantoinase B, at 560,884 to 563,023
9536
mRNA_1169: 9537 - K01469 OPLAH, OXP1, oplAH 5-oxoprolinase (ATP-hydrolysing), at 563,547 to 566,148
9537
mRNA_1170: 9538 - K09531 DNAJC11 DnaJ homolog subfamily C member 11, at 566,177 to 568,431
9538
Group
Condition
mRNA
_1166
mRNA
_1167
mRNA
_1168
mRNA
_1169
mRNA
_1170
9534
9535
9536
9537
9538
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.5
+0.3
-0.5
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.4
-0.1
-0.2
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.4
+0.7
+0.0
-1.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.3
-0.1
+0.1
-0.3
growth on ricinoleic acid
YNB Glucose
-0.3
+0.0
-0.2
+0.1
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.0
-0.0
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.1
+0.1
-0.1
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.2
+0.0
-0.0
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.2
+0.5
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.1
+0.1
-0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.1
+0.2
+0.0
-0.1
growth on oleic acid
YNB Oleic Acid
-0.4
+0.2
+0.2
-0.2
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.3
+0.1
-0.3
-0.2
growth on oleic acid
YNB Glucose
-0.1
+0.2
+0.4
-0.3
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.2
+0.2
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.0
+0.3
+0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.4
+0.3
-0.1
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.3
+0.6
-0.2
+0.2
auxotrophy
YNB Glucose
-0.2
+0.3
+0.6
-0.2
+0.4
auxotrophy
Dropout Complete
-0.3
+0.5
+0.3
-0.1
+0.5
growth on ypd
YPD
+0.1
+0.3
+0.7
-0.1
+0.3
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