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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9538 and 9539 are separated by 120 nucleotides
9539 and 9540 are separated by 372 nucleotides
9540 and 9541 are separated by 206 nucleotides
9541 and 9542 are separated by 501 nucleotides
mRNA_1170: 9538 - K09531 DNAJC11 DnaJ homolog subfamily C member 11, at 566,177 to 568,431
9538
mRNA_1171: 9539 - K07277 SAM50, TOB55, bamA outer membrane protein insertion porin family, at 568,552 to 570,961
9539
mRNA_1172: 9540 - KOG2277 S-M checkpoint control protein CID1 and related nucleotidyltransferases, at 571,334 to 573,898
9540
mRNA_1173: 9541 - Hypothetical Protein, at 574,105 to 575,221
9541
mRNA_1174: 9542 - K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme, at 575,723 to 577,057
9542
Group
Condition
mRNA
_1170
mRNA
_1171
mRNA
_1172
mRNA
_1173
mRNA
_1174
9538
9539
9540
9541
9542
growth on ricinoleic acid
YNB Glucose
-0.4
N.D.
-0.3
+0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
N.D.
-0.1
+0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-1.0
N.D.
+0.1
+0.0
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
N.D.
+0.1
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
N.D.
+0.4
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
N.D.
+0.2
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
N.D.
+0.4
-0.0
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.4
N.D.
-0.0
+0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
-0.5
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
+0.1
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
+0.1
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
+0.2
+0.0
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
+0.0
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
+0.1
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
+0.1
+0.0
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
+0.0
+0.1
-0.0
auxotrophy
Dropout Complete
+0.5
N.D.
+0.0
+0.0
-0.3
auxotrophy
YNB Glucose
+0.4
N.D.
+0.0
-0.0
-0.0
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
+0.2
+0.1
+0.3
growth on oleic acid
YNB Glucose
-0.2
N.D.
+0.4
+0.1
+0.5
growth on ypd
YPD
+0.3
N.D.
+0.3
+0.1
+0.1
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