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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9543 and 9544 are separated by 229 nucleotides
9544 and 9545 are separated by 590 nucleotides
9545 and 9546 are separated by 161 nucleotides
9546 and 9547 are separated by 265 nucleotides
mRNA_1175: 9543 - Hypothetical Protein, at 577,542 to 578,636
9543
mRNA_1176: 9544 - Hypothetical Protein, at 578,866 to 579,597
9544
mRNA_1177: 9545 - K15326 TSEN54 tRNA-splicing endonuclease subunit Sen54, at 580,188 to 581,963
9545
mRNA_1178: 9546 - Hypothetical Protein, at 582,125 to 583,749
9546
mRNA_1179: 9547 - K12611 DCP1B mRNA-decapping enzyme 1B, at 584,015 to 586,277
9547
Group
Condition
mRNA
_1175
mRNA
_1176
mRNA
_1177
mRNA
_1178
mRNA
_1179
9543
9544
9545
9546
9547
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.6
N.D.
-0.3
-1.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.1
N.D.
-0.1
-1.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
N.D.
-0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.0
-0.4
N.D.
-0.7
+0.7
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
N.D.
+0.0
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.2
N.D.
+0.2
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.2
N.D.
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
N.D.
+0.2
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.5
N.D.
-0.0
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.3
N.D.
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
N.D.
+0.1
-0.2
growth on oleic acid
YNB Glucose
+0.3
-0.1
N.D.
-0.3
+0.2
growth on ypd
YPD
-0.2
-0.1
N.D.
+0.2
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.5
N.D.
+0.3
+0.6
growth on ricinoleic acid
YNB Glucose
-0.0
+0.0
N.D.
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.0
N.D.
+0.3
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.0
N.D.
+0.4
-0.0
auxotrophy
YNB Glucose
-0.1
+0.0
N.D.
+0.8
-0.2
auxotrophy
Dropout Complete
+0.1
-0.0
N.D.
+1.0
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.7
N.D.
+0.3
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
N.D.
+1.0
+0.1
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