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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9548 and 9549 are separated by 283 nucleotides
9549 and 9550 are separated by 412 nucleotides
9550 and 9551 are separated by 267 nucleotides
9551 and 9552 are separated by 558 nucleotides
mRNA_1180: 9548 - Hypothetical Protein, at 587,058 to 592,378
9548
mRNA_1181: 9549 - Hypothetical Protein, at 592,662 to 593,327
9549
mRNA_1182: 9550 - K12816 CDC40, PRP17 pre-mRNA-processing factor 17, at 593,740 to 596,442
9550
mRNA_1183: 9551 - KOG2533 Permease of the major facilitator superfamily, at 596,710 to 598,781
9551
mRNA_1184: 9552 - KOG0143 Iron/ascorbate family oxidoreductases, at 599,340 to 600,971
9552
Group
Condition
mRNA
_1180
mRNA
_1181
mRNA
_1182
mRNA
_1183
mRNA
_1184
9548
9549
9550
9551
9552
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-1.6
N.D.
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-1.0
N.D.
-0.2
-0.2
auxotrophy
Dropout Complete
+0.0
-1.5
N.D.
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-1.3
N.D.
+0.0
-0.1
growth on ricinoleic acid
YNB Glucose
+0.0
-1.4
N.D.
+0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.5
N.D.
-0.4
+0.0
auxotrophy
YNB Glucose
+0.2
-1.2
N.D.
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.9
N.D.
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.9
N.D.
+0.0
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.2
N.D.
-0.3
+0.1
growth on oleic acid
YNB Glucose
-0.2
-0.3
N.D.
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.5
N.D.
-0.0
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.6
N.D.
-0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.4
N.D.
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.4
N.D.
+0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.0
-0.3
N.D.
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.3
N.D.
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.3
N.D.
-0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.0
N.D.
+0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.0
N.D.
+0.3
-0.1
growth on ypd
YPD
-0.1
-0.0
N.D.
+0.3
+0.1
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