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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9550 and 9551 are separated by 267 nucleotides
9551 and 9552 are separated by 558 nucleotides
9552 and 9553 are separated by 432 nucleotides
9553 and 9554 are separated by 96 nucleotides
mRNA_1182: 9550 - K12816 CDC40, PRP17 pre-mRNA-processing factor 17, at 593,740 to 596,442
9550
mRNA_1183: 9551 - KOG2533 Permease of the major facilitator superfamily, at 596,710 to 598,781
9551
mRNA_1184: 9552 - KOG0143 Iron/ascorbate family oxidoreductases, at 599,340 to 600,971
9552
mRNA_1185: 9553 - KOG1399 Flavin-containing monooxygenase, at 601,404 to 603,765
9553
mRNA_1186: 9554 - K20410 MAPKAP1, SIN1 target of rapamycin complex 2 subunit MAPKAP1, at 603,862 to 607,168
9554
Group
Condition
mRNA
_1182
mRNA
_1183
mRNA
_1184
mRNA
_1185
mRNA
_1186
9550
9551
9552
9553
9554
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
-0.1
+0.1
-1.7
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
-0.2
+0.2
-1.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.4
+0.0
+0.3
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
-0.1
+0.0
-0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
-0.2
-0.1
-0.2
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
+0.0
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.3
-0.1
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.0
-0.1
-0.3
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.3
+0.1
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
+0.0
+0.0
+0.1
auxotrophy
Dropout Complete
N.D.
+0.0
+0.1
-0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
-0.0
+0.0
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.0
-0.0
-0.1
+0.1
auxotrophy
YNB Glucose
N.D.
+0.1
-0.1
-0.0
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.2
+0.2
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
+0.2
-0.1
-0.0
growth on oleic acid
YNB Glucose
N.D.
+0.0
-0.0
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.0
-0.0
+0.0
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.0
+0.1
-0.0
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
+0.2
+0.0
+0.1
growth on ypd
YPD
N.D.
+0.3
+0.1
+0.3
-0.1
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