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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9554 and 9555 are separated by 290 nucleotides
9555 and 9556 are separated by 271 nucleotides
9556 and 9557 are separated by 573 nucleotides
9557 and 9558 are separated by 612 nucleotides
mRNA_1186: 9554 - K20410 MAPKAP1, SIN1 target of rapamycin complex 2 subunit MAPKAP1, at 603,862 to 607,168
9554
mRNA_1187: 9555 - Hypothetical Protein, at 607,459 to 608,635
9555
mRNA_1188: 9556 - Hypothetical Protein, at 608,907 to 610,370
9556
mRNA_1189: 9557 - K02183 CALM calmodulin, at 610,944 to 612,445
9557
mRNA_1190: 9558 - K05747 WAS Wiskott-Aldrich syndrome protein, at 613,058 to 614,661
9558
Group
Condition
mRNA
_1186
mRNA
_1187
mRNA
_1188
mRNA
_1189
mRNA
_1190
9554
9555
9556
9557
9558
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.3
-0.6
-1.4
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-1.7
-0.9
+0.3
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.7
-1.3
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.0
-0.9
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.0
-0.9
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
-0.2
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.2
-0.2
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
+0.0
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.3
-0.5
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
+0.1
+0.6
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
-0.2
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.1
+0.1
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.1
-0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
+0.3
N.D.
N.D.
auxotrophy
Dropout Complete
-0.1
+0.1
+0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
+0.5
N.D.
N.D.
growth on ypd
YPD
-0.1
-0.1
+1.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.1
+0.9
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.3
+0.6
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.0
+1.0
N.D.
N.D.
auxotrophy
YNB Glucose
+0.0
+0.3
+1.3
N.D.
N.D.
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