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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9556 and 9557 are separated by 573 nucleotides
9557 and 9558 are separated by 612 nucleotides
9558 and 9559 are separated by 400 nucleotides
9559 and 9560 are separated by 130 nucleotides
mRNA_1188: 9556 - Hypothetical Protein, at 608,907 to 610,370
9556
mRNA_1189: 9557 - K02183 CALM calmodulin, at 610,944 to 612,445
9557
mRNA_1190: 9558 - K05747 WAS Wiskott-Aldrich syndrome protein, at 613,058 to 614,661
9558
mRNA_1191: 9559 - KOG3033 Predicted PhzC/PhzF-type epimerase, at 615,062 to 616,261
9559
mRNA_1192: 9560 - KOG2504 Monocarboxylate transporter, at 616,392 to 618,414
9560
Group
Condition
mRNA
_1188
mRNA
_1189
mRNA
_1190
mRNA
_1191
mRNA
_1192
9556
9557
9558
9559
9560
ypd buoyancy
40 hrs No Buoyancy Separation
-1.3
N.D.
N.D.
-0.7
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.4
N.D.
N.D.
+0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.9
N.D.
N.D.
+0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.9
N.D.
N.D.
+0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
N.D.
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
N.D.
N.D.
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
N.D.
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
N.D.
+0.3
-0.2
growth on oleic acid
YNB Glucose
-0.2
N.D.
N.D.
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
N.D.
N.D.
+0.4
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
N.D.
N.D.
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.3
N.D.
N.D.
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
N.D.
N.D.
+0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
N.D.
N.D.
+0.4
-0.0
auxotrophy
Dropout Complete
+0.5
N.D.
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.6
N.D.
N.D.
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.9
N.D.
N.D.
+0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
N.D.
N.D.
+0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.0
N.D.
N.D.
+0.1
+0.1
auxotrophy
YNB Glucose
+1.3
N.D.
N.D.
+0.3
-0.0
growth on ypd
YPD
+1.0
N.D.
N.D.
+0.3
+0.3
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