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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9557 and 9558 are separated by 612 nucleotides
9558 and 9559 are separated by 400 nucleotides
9559 and 9560 are separated by 130 nucleotides
9560 and 9561 are separated by 314 nucleotides
mRNA_1189: 9557 - K02183 CALM calmodulin, at 610,944 to 612,445
9557
mRNA_1190: 9558 - K05747 WAS Wiskott-Aldrich syndrome protein, at 613,058 to 614,661
9558
mRNA_1191: 9559 - KOG3033 Predicted PhzC/PhzF-type epimerase, at 615,062 to 616,261
9559
mRNA_1192: 9560 - KOG2504 Monocarboxylate transporter, at 616,392 to 618,414
9560
mRNA_1193: 9561 - KOG2504 Monocarboxylate transporter, at 618,729 to 620,711
9561
Group
Condition
mRNA
_1189
mRNA
_1190
mRNA
_1191
mRNA
_1192
mRNA
_1193
9557
9558
9559
9560
9561
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.7
-0.3
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.1
-0.2
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.1
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.1
-0.1
-0.2
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.1
-0.1
-0.2
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.3
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.3
-0.2
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.4
-0.2
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.1
+0.0
-0.1
auxotrophy
Dropout Complete
N.D.
N.D.
+0.1
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.3
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.1
-0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.1
+0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
-0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.1
+0.0
+0.0
auxotrophy
YNB Glucose
N.D.
N.D.
+0.3
-0.0
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.4
-0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.3
+0.1
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.1
+0.1
+0.3
growth on ypd
YPD
N.D.
N.D.
+0.3
+0.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.2
+0.2
+0.3
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