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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9559 and 9560 are separated by 130 nucleotides
9560 and 9561 are separated by 314 nucleotides
9561 and 9562 are separated by 441 nucleotides
9562 and 9563 are separated by 469 nucleotides
mRNA_1191: 9559 - KOG3033 Predicted PhzC/PhzF-type epimerase, at 615,062 to 616,261
9559
mRNA_1192: 9560 - KOG2504 Monocarboxylate transporter, at 616,392 to 618,414
9560
mRNA_1193: 9561 - KOG2504 Monocarboxylate transporter, at 618,729 to 620,711
9561
mRNA_1194: 9562 - K05925 METTL3_14 mRNA (2'-O-methyladenosine-N6-)-methyltransferase, at 621,153 to 623,607
9562
mRNA_1195: 9563 - K03248 EIF3G translation initiation factor 3 subunit G, at 624,077 to 625,434
9563
Group
Condition
mRNA
_1191
mRNA
_1192
mRNA
_1193
mRNA
_1194
mRNA
_1195
9559
9560
9561
9562
9563
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-0.3
-0.5
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.1
-0.3
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.2
-0.2
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
+0.3
-0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.2
+0.4
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.1
-0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.2
-0.0
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.2
-0.4
+0.5
N.D.
growth on oleic acid
YNB Glucose
+0.1
-0.1
-0.2
+0.4
N.D.
growth on oleic acid
YNB Oleic Acid
+0.3
-0.2
-0.1
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.0
+0.0
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.0
-0.1
-0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
+0.1
+0.2
N.D.
auxotrophy
Dropout Complete
+0.1
-0.1
+0.0
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
-0.0
+0.3
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.0
-0.1
+0.5
N.D.
auxotrophy
YNB Glucose
+0.3
-0.0
+0.0
+0.4
N.D.
growth on ypd
YPD
+0.3
+0.3
+0.2
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.1
-0.0
+0.6
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.1
+0.3
+0.8
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.2
+0.3
+0.6
N.D.
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