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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9561 and 9562 are separated by 441 nucleotides
9562 and 9563 are separated by 469 nucleotides
9563 and 9564 are separated by 792 nucleotides
9564 and 9565 are separated by 1287 nucleotides
mRNA_1193: 9561 - KOG2504 Monocarboxylate transporter, at 618,729 to 620,711
9561
mRNA_1194: 9562 - K05925 METTL3_14 mRNA (2'-O-methyladenosine-N6-)-methyltransferase, at 621,153 to 623,607
9562
mRNA_1195: 9563 - K03248 EIF3G translation initiation factor 3 subunit G, at 624,077 to 625,434
9563
mRNA_1196: 9564 - HMMPfam-Membrane bound O-acyl transferase family-PF13813, at 626,227 to 627,477
9564
mRNA_1197: 9565 - KOG2385 Uncharacterized conserved protein, at 628,765 to 631,426
9565
Group
Condition
mRNA
_1193
mRNA
_1194
mRNA
_1195
mRNA
_1196
mRNA
_1197
9561
9562
9563
9564
9565
auxotrophy
YNB Glucose
+0.0
+0.4
N.D.
-0.9
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.1
N.D.
-0.3
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.1
N.D.
-0.8
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.2
N.D.
-0.7
-0.6
growth on oleic acid
YNB Oleic Acid
-0.1
+0.2
N.D.
-0.8
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.3
N.D.
-0.5
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.0
N.D.
-0.6
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.1
N.D.
-0.7
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
N.D.
-0.5
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
N.D.
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.5
N.D.
-0.4
-0.4
auxotrophy
Dropout Complete
+0.0
+0.4
N.D.
-0.2
-0.4
growth on oleic acid
YNB Glucose
-0.2
+0.4
N.D.
-0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.1
N.D.
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.3
N.D.
+0.4
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.8
N.D.
-0.9
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.5
N.D.
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.3
N.D.
+0.5
+0.2
growth on ypd
YPD
+0.2
-0.2
N.D.
+0.3
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.6
N.D.
-0.3
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.6
N.D.
+0.1
+0.7
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