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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9563 and 9564 are separated by 792 nucleotides
9564 and 9565 are separated by 1287 nucleotides
9565 and 9566 are separated by 228 nucleotides
9566 and 9567 are separated by 409 nucleotides
mRNA_1195: 9563 - K03248 EIF3G translation initiation factor 3 subunit G, at 624,077 to 625,434
9563
mRNA_1196: 9564 - HMMPfam-Membrane bound O-acyl transferase family-PF13813, at 626,227 to 627,477
9564
mRNA_1197: 9565 - KOG2385 Uncharacterized conserved protein, at 628,765 to 631,426
9565
mRNA_1198: 9566 - Hypothetical Protein, at 631,655 to 633,710
9566
mRNA_1199: 9567 - K02325 POLE2 DNA polymerase epsilon subunit 2, at 634,120 to 636,519
9567
Group
Condition
mRNA
_1195
mRNA
_1196
mRNA
_1197
mRNA
_1198
mRNA
_1199
9563
9564
9565
9566
9567
growth on oleic acid
YNB Oleic Acid
N.D.
-0.8
-0.2
-0.1
N.D.
auxotrophy
YNB Glucose
N.D.
-0.9
-0.6
+0.5
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.7
-0.6
+0.5
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.9
+0.2
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.5
-0.7
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.7
+0.2
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.4
-0.4
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.5
-0.3
+0.3
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.6
+0.0
+0.2
N.D.
growth on oleic acid
YNB Glucose
N.D.
-0.2
-0.1
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.8
+0.1
+0.4
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.1
+0.0
N.D.
auxotrophy
Dropout Complete
N.D.
-0.2
-0.4
+0.5
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.3
-0.2
+0.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
-0.1
+0.4
N.D.
growth on ypd
YPD
N.D.
+0.3
+0.3
-0.6
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
+0.7
-0.6
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.3
+0.5
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.5
+0.2
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
+0.2
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.4
+0.2
+0.3
N.D.
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