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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9567 and 9568 are separated by 212 nucleotides
9568 and 9569 are separated by 201 nucleotides
9569 and 9570 are separated by 1255 nucleotides
9570 and 9571 are separated by 688 nucleotides
mRNA_1199: 9567 - K02325 POLE2 DNA polymerase epsilon subunit 2, at 634,120 to 636,519
9567
mRNA_1200: 9568 - KOG3132 m3G-cap-specific nuclear import receptor (Snurportin1), at 636,732 to 638,216
9568
mRNA_1201: 9569 - K12625 LSM6 U6 snRNA-associated Sm-like protein LSm6, at 638,418 to 638,898
9569
mRNA_1202: 9570 - K11253 H3 histone H3, at 640,154 to 640,968
9570
mRNA_1203: 9571 - K01049 ACHE acetylcholinesterase, at 641,657 to 643,946
9571
Group
Condition
mRNA
_1199
mRNA
_1200
mRNA
_1201
mRNA
_1202
mRNA
_1203
9567
9568
9569
9570
9571
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.1
N.D.
-1.8
-0.5
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.3
N.D.
-1.5
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.6
N.D.
-0.4
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
N.D.
-0.7
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
N.D.
-0.9
+0.1
auxotrophy
Dropout Complete
N.D.
+0.2
N.D.
-0.2
-0.3
growth on ypd
YPD
N.D.
-0.0
N.D.
-0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.3
N.D.
+0.3
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
N.D.
+0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.0
N.D.
+0.2
-0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
N.D.
+0.5
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.2
N.D.
+0.2
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.0
N.D.
+0.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.7
N.D.
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
N.D.
+0.7
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
N.D.
+0.1
+0.1
auxotrophy
YNB Glucose
N.D.
+0.1
N.D.
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
N.D.
+0.8
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.8
N.D.
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
N.D.
+0.8
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.0
N.D.
+1.2
-0.2
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