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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9569 and 9570 are separated by 1255 nucleotides
9570 and 9571 are separated by 688 nucleotides
9571 and 9572 are separated by 569 nucleotides
9572 and 9573 are separated by 521 nucleotides
mRNA_1201: 9569 - K12625 LSM6 U6 snRNA-associated Sm-like protein LSm6, at 638,418 to 638,898
9569
mRNA_1202: 9570 - K11253 H3 histone H3, at 640,154 to 640,968
9570
mRNA_1203: 9571 - K01049 ACHE acetylcholinesterase, at 641,657 to 643,946
9571
mRNA_1204: 9572 - K11253 H3 histone H3, at 644,516 to 645,336
9572
mRNA_1205: 9573 - Hypothetical Protein, at 645,858 to 646,499
9573
Group
Condition
mRNA
_1201
mRNA
_1202
mRNA
_1203
mRNA
_1204
mRNA
_1205
9569
9570
9571
9572
9573
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.8
-0.5
+0.3
-0.9
ypd buoyancy
40 hrs High Buoyancy
N.D.
-1.5
+0.0
+0.1
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.3
+0.0
-1.4
-0.4
auxotrophy
Dropout Complete
N.D.
-0.2
-0.3
-0.8
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
-0.0
-0.7
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
+0.1
-0.8
-0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.7
-0.1
+0.0
-0.0
growth on ypd
YPD
N.D.
-0.1
-0.2
-0.3
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.4
-0.2
-0.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.5
+0.2
-0.5
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.9
+0.1
+0.1
+0.4
growth on oleic acid
YNB Glucose
N.D.
+0.2
-0.1
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
-0.3
-0.2
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
+0.3
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.5
-0.1
-0.1
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
+0.2
+0.3
+0.3
auxotrophy
YNB Glucose
N.D.
+0.5
-0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.8
-0.2
+0.2
+0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+1.2
-0.2
-0.2
+0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.8
-0.1
+0.3
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.7
-0.1
+0.5
+1.1
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