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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9571 and 9572 are separated by 569 nucleotides
9572 and 9573 are separated by 521 nucleotides
9573 and 9574 are separated by 245 nucleotides
9574 and 9575 are separated by 673 nucleotides
mRNA_1203: 9571 - K01049 ACHE acetylcholinesterase, at 641,657 to 643,946
9571
mRNA_1204: 9572 - K11253 H3 histone H3, at 644,516 to 645,336
9572
mRNA_1205: 9573 - Hypothetical Protein, at 645,858 to 646,499
9573
mRNA_1206: 9574 - K00021 HMGCR hydroxymethylglutaryl-CoA reductase (NADPH), at 646,745 to 651,192
9574
mRNA_1207: 9575 - BLAST glycosyltransferase [Tsuchiyaea wingfieldii CBS 7..., at 651,866 to 653,313
9575
Group
Condition
mRNA
_1203
mRNA
_1204
mRNA
_1205
mRNA
_1206
mRNA
_1207
9571
9572
9573
9574
9575
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-1.4
-0.4
N.D.
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.7
-0.7
N.D.
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.3
-0.9
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.8
-0.5
N.D.
+0.1
auxotrophy
Dropout Complete
-0.3
-0.8
+0.1
N.D.
+0.1
growth on oleic acid
YNB Glucose
-0.1
-0.2
-0.1
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.2
+0.2
N.D.
-0.1
growth on ypd
YPD
-0.2
-0.3
+0.0
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
+0.0
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.1
-0.6
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.5
+0.3
N.D.
-0.3
auxotrophy
YNB Glucose
-0.1
+0.1
+0.1
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
+0.2
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
+0.3
-0.1
-0.1
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
-0.0
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.1
+0.4
N.D.
-0.5
growth on ricinoleic acid
YNB Glucose
+0.2
+0.3
+0.3
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.2
+0.9
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.3
+0.7
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.2
+0.9
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.5
+1.1
N.D.
+0.4
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